Rolf Krause

Academic service

• Since 2015 Vice-Dean, Faculty of Informatics, USI
  
• Since 2009: Director Institute of Computational Science, Faculty of Informatics, USI
  July 2007–March 2009: Chairman of the examination board for the Bachelor- and Master studies in mathematics at the University of Bonn
  
• July 2007 – March 2009: Chairman of the board of finance for tuition fees at the university of Bonn
  
• 2009 – 2012 Director of the master specialization “Applied Mathematics and Computational Science”,
  faculty of informatics, USI, Lugano
  
• Since 20013 Vice-Director of the master program “Applied Mathematics and Computational Science”,
  Institute of Computational Science, USI, Lugano
  
• Reviewer for the DFG, and for SISC, SINUM, Numerische Mathematik, APNUM, IJNME, ACOM,
  CMAME and other international Journals

Projects and Collaborations

Currently Funded Projects

positive evaluation Formal approval by DFG/snf pending (July 2016). DFG-Priority Program SPP
SPP 1962 (snf funded): “ Non-smooth and Complementarity-based Distributed Parameter Systems:
Simulation and Hierarchical Optimization”. Coordination Prof. M.Hintermüller, Humboldt-
Universität zu Berlin. Project with Prof. Dr. G. Starke (Duisburg) 1 PhD. Start: 01/2013. Stress-
Based Methods for Variational Inequalities in Solid Mechanics: Finite Element Discretization and
Solution by Hierarchical Optimization

[1] Novel electro-mechanical phenotyping of heart failure patients candidate for cardiac resynchronization
therapy 1 PhD A. Auricchio (PI; CCT), R. Krause (Co-PI; USI), F. Maffessanti
(Co-PI; USI)

[2] DFG-Priority Program SPP 1648 (snf funded): “Software for Exascale Computing “SPPEXA”
(2nd phase). Project on adaptivity for space-time integration in HPC within the initiative “Extreme
scale solvers for coupled systems” (Prof.Dr. G. Wittum (speaker), Frankfurt; Prof. Dr. W. Hackbusch
(Max Planck Institute for Mathematics in the Sciences, Leipzig); Prof. Dr. L. Grasedyck (Aachen);
Prof. Dr. W. Resch (HLRS Stuttgart); Prof. Dr. V. Schulz (Trier) (“snf/DFG-Dachabkommen”) 1
PhD. Start: 01/2013.

[3] Industry Project with Siemens Berlin on Uncertainty Quantification for Turbine Blades

[4] DFG-Priority Program SPP 1748 (snf funded) “Reliable simulation techniques in solid mechanics.
Development of non-standard discretization methods, mechanical and mathematical analysis”.
Project on “Large-scale simulation of pneumatic and hydraulic fracture with a phase-field approach”
(Prof.Dr. K. Weinberg (Universität Siegen; Priv.-Doz. Dr. C. Hesch (KIT, Karlsruhe); (“snf/DFGDachabkommen”)
1 PhD. Start: 2015.

[5] snf project 200021_156178 “Geometry-Aware FEM in Computational Mechanics” (together with
Prof. Dr. K. Hormann). 1 PhD. Start: 09/2014

[6] NFP 70 “Energiewende” snf-project within larger umbrella proposal in the framework of the
SCCER “Supply of Energy” Modelling permeability and stimulation for deep heat mining with T.
Driesner (ETH); S. Miller (Neuchâtel) 1 PhD. Start: 2015.

[7] PASC Swiss Platform for Advanced Scientific Computing “AV-Flow” 1 PhD. D. Obrist (PI;
Bern), R. Krause(Co-PI; USI)

[8] PASC Swiss Platform for Advanced Scientific Computing “iFCCS - Integrative HPC Framework
for Coupled Cardiac Simulations” 1 PostDoc. Together with A. Quarteroni, S. Deparis (EPFL), M.
Ptse (ICS/USI)

[9] PASC Swiss Platform for Advanced Scientific Computing “Snowball sampling and conditional
estimation for exponential random graphs models for large networks in high performance computing”
Alessandro Lomi (PI; USI), Rolf Krause (PI; USI)

[10] SERI (Swiss Space Office) “Phase unwrapping Parallel Accelerator (PUPAx) ” together with P.
Pasquali (sarmap, TI)

[11] SciEx project “CATION - Cardiac activation time imaging for noninvasive characterisation of ventricular
conduction abnormalities” 1 PhD. together with A.Auricchio, M. Potse (CCMC/USI). Foreign
partner: M. Tysler (Bratislava)

[12] snf project 205321_149828 “A Flexible High Performance Approach to Cardiac Electromechanics”
together with Prof. Dr. A. Auricchio (Fondazione Cardiocentro Ticino) and Prof. Dr. M. Potse (USI).
1 PhD. Start: January 2014

[13] snf/DFG project 200021L_146167 “Parallel multilevel solvers for coupled interface problems” together
with Prof. Dr. A. Reusken (RWTH Aachen) and Dr. S. Groß (RWTH Aachen). (“snf/DFGDachabkommen”)
2 PhD. Start: Fall 2013

[14] SystemsX project http://www.SystemsX.ch “A massively parallel space-time connected approach
based on implicit active contour methods to track leukocytes observed by multiphoton intra
vital and confocal microscopy ” together with Dr. F.S. González (PI, Institute for Research in
Biomedicine (IRB)), M. Thelen (IRB), M. Bronstein (USI). 1 PhD. Start: 01/2014

[15] Modeling Facility in the Swiss Competence Center on Energy Research “Supply of Energy”
(SCCER-SoE) Responsible for Task 4.3, “Modeling Facility (USI, CSCS, ETH Zurich)”. 1 PostDoc.
Head of SCCER-SoE: Domenico Giardini (ETH Zurich). Start: 11/2013

[16] Sub-Project in the Swiss Competence Center on Energy Research “Future Swiss Electrical
Infrastructures ” (SCCER-FURIES)
1 PostDoc. Head of SCCER-FURIES: Mario Paolone (EPF Lausanne). Start: 11/2013

[17] Cooperation with Dr. R. Sobottke, Klinik und Poliklinik für Orthopädie, University of Cologne, on
the simulation of the loading conditions in the human spine. This cooperation is supported by the
DFG.

[18] Center for Computational Medicine in Cardiology Responsible for creation and build up of the
center (with Prof. Dr. A. Auricchio). The center is currently being built up and will consists of 7
PostDocs and 3 PhD students. Start: 6/2014
 Project financed by “Biologics Delivery Systems” on electromechanical coupling in the huma
heart. 1 PostDoc
 Financial support by Mantegazza foundation (Metis)
 Financial support by FIDINAM Foundation
 Financial support by TRM foundation
 Financial support by USI
 Financial support by Horten foundation
 Financial support by Schiller AG, Baara

[19] IRB project STAT3 - Molecular characterization of a novel class of STAT3 inhibitors. With C.
Catapano (IOR), A. Cavalli (IRB), I. Pivkin (USI) 1 PostDoc

[20] CSCS preparatory project with A. Cavalli (IRB), J. Sgrignani (IRB), I. Pivkin (USI), C. Catapano
(IOR) “Inhibition mechanism of novel STAT3 inhibitors investigated by atomistic simulations” 600
CPU hours, 2014.

[21] CSCS project (Computing time) "Improving Diagnosis of Atrial Fibrillation” together with Prof. Dr. M.
Potse (USI) and Prof. Dr. Ulrich Schotten (University of Maastricht)
(4’000’000 hours computing time at CSCS, 2013-2016)

Former Fundings

[20] CSCS project (Computing time) "Sensitivity Analysis of Electrocardiograms Simulated with a Realistic
Large-Scale Heart Model" together with Prof. Dr. M. Potse
(800’000 hours computing time at CSCS, 2011-2013)

[21] CSCS project (Computing time)"Electrophysiology of Heart Failure" together with Prof. Dr. M.
Potse (USI)
(720’000 hours computing time at CSCS, 2012-2014)

[22] Project within the DFG-funded Clinical Research Unit (KFO 208) “Aetiology and Sequelae of
Periodontal Diseases”: Joint project TP5 with Prof. Dr. C. Bourauel, University of Bonn “Development
of Mathematical Models and Efficient Algorithms to Simulate the Loading Conditions in the
Periodontium in Dental Biomechanics” 1/2 PhD.

[23] DFG Schwerpunktprogramm SPPEXA Project on parallel time integration in HPC within the
initiative “Extreme scale solvers for coupled systems” (Prof.Dr. G. Wittum (speaker), Frankfurt;
Prof. Dr. W. Hackbusch (Max Planck Institute for Mathematics in the Sciences, Leipzig);
Prof. Dr. L. Grasedyck (Aachen); Prof. Dr. W. Resch (HLRS Stuttgart); Prof. Dr. V. Schulz
(Trier) DFG-Priority Program: “Software for Exascale Computing (SPP 1648)”. (“snf/DFGDachabkommen”)
1 PhD. Start: 01/2013.

[24] snf project 200021_140583 “Geometry-Aware FEM in Computational Mechanics” (together with
Prof. Dr. K. Hormann). 1 PhD. Start: 09/2012

[25] Project with Siemens and the University of Wuppertal (Prof. Dr. H. Gottschalk) on the prediction
of material fatigue: “Life Expectancy in extreme temperatures” (1 PhD at Siemens/Mühlheim)

[26] Industry project with the company sarmap on “SARSCAPE Image processor accelerator” funded by
ESA. 1 PostDoc. Start: 09/2012

[27] Sub-Project on Cardiac Simulation in the Network “Biology across Scales” (coordinator P. Koumoutsakos
(ETHZ)) (Community Developing Networks within the HP2C-initiative, with A. Quarteroni
(EPFL), S. Deparis (EPFL), O. Schenk (USI), M. Potse (USI))

[28] snf project 200021_132198 “A Decomposition Approach for the Numerical Solution of Frictional
Contact Problems in Nonlinear Elasticity” 1 PhD. 10/2010-10/2013

[29] Industry research project with Carl Zeiss Jena on contact problems accoring in the production of
freeform lenses (2011-2013)

[30] CTI project with Cardiocentro Ticino (Prof. Dr. A. Auricchio), Schiller AG Baar, EPF Lausanne
(Dr. J.-M. Vesin) on the “Development of risk markers for atrial fibrilation based on numerical
simulation” 1 PostDoc

[31] Cooperation with Prof. Dr. G. Wittum, Goethe-University of Frankfurt: Industry project with the
Automotive Simulation Center Stuttgart e.V. since 12/2009 on crash simulations “Reduzierung
numerischer Sensitivitäten in der Crashsimulation auf HPC-Rechnern”

[32] Responsible for the initial build-up of the core group part of the Swiss HP2C-initiative “High
Performance and Productivity Computing” located at the University of Lugano.
The HP2C initiative and the core group in Lugano (with Prof. Dr. M. Bronstein, Prof. Dr. I. Horenko,
Prof. Dr. I. Pivkin, Prof. Dr. O. Schenk, Prof. Dr. M. Parrinello) have been evaluated highly positively
in December 2011 by an international review committee,
see http://www.hp2c.ch/events/project-review/for details. (in total approx. 2’000’000 CHF)

[33] Project “A high performance approach to cardiac resynchronization therapy - development of a
validated multiscale model for the study of the electrical activation system of the human heart
using adaptive simulation techniques” within the initiative “Ticino Rete-Computational Life Science
Network”. Joint project with Prof. Dr. A. Auricchio, Cardio Centro Ticino, Lugano, and
Prof. Dr. F. Prinzen, University of Maastricht. 1 PostDoc. Within the scientific framework of this
project, the endowed visiting professorship “High Performance Computing in Cardiac Simulation”
(M. Potse) has been created within the faculty of Informatics at the Institute of Computational
Science.

[34] Ford University Research Program: “Advanced numerical algorithms to improve high nonlinear
crash simulation with multi-body contacts and friction” 01/2011-12/2012 PhD.

[35] Joint project with Prof. Dr. A. Danani, SUPSI, Lugano, “Multiscale computational study of linear
and hyperbranched polymers for biomedical applications” within the initiative “Ticino Rete-
Computational Life Science Network”. 1 PhD.

[36] Industry research project on the multiscale modeling of frictional phenomea in cooperation with
Prof. Dr. F. Schuricht, University of Dresden and an undisclosed international company (2008-2012)

[37] Project within in ASIL “Advanced Solvers Integrated Library” (Prof. Dr. G. Wittum (speaker),
Frankfurt; Prof. Dr. W. Hackbusch (Max Planck Institute for Mathematics in the Sciences, Leipzig);
Prof. Dr. C. Wieners(Karlsruhe); Prof. Dr. W. Resch (HLRS Stuttgart); Prof. Dr. V. Schulz (Trier))
in the BMBF (Federal Ministry of Education and Research, Germany) call “HPC-software for scalable
parallel computing”, 01/2009 - 06/2012

[38] Project “Entwicklung bionischer Strömungssensoren für hydrodynamische Messsysteme nach dem
Vorbild des Seitenliniensystems der Fische (Development of bionic flow-sensors for hydrodynamic
measuring systems modeled on the fish’s lateral line)” with Prof. Dr. H. Bleckmann, University of
Bonn and Manfred Lacher, Stiftung Caesar funded by BMBF.

[39] PhD scholarship M. Walloth: “Adaptive numerical simulation of contact problems: Resolving local
effects at the contact boundary in space and time”, 10/2008- 10/2011; Bonn International Graduate
School in Mathematics

[40] Project leader (with Prof. Dr. M. A. Schweitzer) of the project C6 “Coupled Microscale Simulation
of Nonlinear Processes in Structural Mechanics” within the Collaborative Research Center (SFB)
611 “Singular Phenomena and Scaling in Mathematical Models”, 04/2005 -03/2009

[41] Project leader (with Prof. Dr. H. Harbrecht) of the project C7 “Multiscale approximation of boundary
value problems on stochastic domains”’ within the Collaborative Research Center (SFB) 611
“Singular Phenomena and Scaling in Mathematical Models”, 04/2008 -03/2009

[42] PhD scholarship C. Groß: “A Unifying Theory for Nonlinear Additively and Multiplicatively Preconditioned
Globalization Strategies”, 04/2007 - 09/2009; Bonn International Graduate School
Mathematics within the excellence cluster “Mathematics: Foundations, Models, Applications”

[43] PhD scholarship T. Dickopf: “Generic Multiscale Modelling of Complex Biomechanical InterfaceProcesses”, 10/2007-07/2010; Bonn International Graduate School in Mathematics within the excellence
cluster “Mathematics: Foundations, Models, Applications”

[44] Project leader (with Prof. Dr. P. Deuflhard and Prof. Dr. R. Kornhuber) of the project A2 “Simulation
of the Human Gait for Osteotomic Surgery”, DFG Research Center Matheon, Berlin (First phase of
the DFG-Research Center Matheon)

For more informations, please visit:

Group Krause Projects page

Invited presentations

Upcoming Plenary talk, International Multigrid Conference 2016 (IMG), (European Multigrid Conference),
December 2016, Bruchsal, Germany
upcoming Plenary talk, CMSE 2016-Computational Mathematics in Science and Engineering, Czech Republic,
May 2016

[1] Adaptive methods in space and in space-time for electrophysiology - from spatial adaptivity to spacetime
adaptivity with local time-stepping, CBC Workshop on Dynamic Adaptivity, December 9-10,
2015, SIMULA, Oslo

[2] Parallel Methods in Cardiac Simulation – from Lightweight Adaptivity to Coupled Models 4th International
Conference on Computational and Mathematical Biomedical Engineering, CMBE2015 June
2015

[3] Keynote Talk: Massively Parallel Strategies for Contact Interface Detection, Information Transfer,
and Solution, USNCCM 13, San Diego, July 2015

[4] A Flexible High Performance Approach to Cardiac Electromechanics, 9th European Solid Mechanics
Conference, Madrid, July 2015

[5] Efficient Parallel Solution Methods for Biomechanical Problems Involving the Interaction of Fluid
and Structure, Workshop on Computational Biomechanics, Graz, 2014 (with M. Favino, J. Steiner)

[6] Keynote Talk: Stochastic Multiscale Modelling: Computational Challengesin “Computational challenges
in multiscale modelling Symposium” (with I. Pivkin)

[7] Adaptivity and local impact detection for dynamic contact problems in the minisymposium “Impact
and Crash Mechanics” (with M. Walloth) World Congress on Computational Mechanics, 2014,
Barcelona

[8] Efficient numerical simulation of periodontal ligament in the minisymposium “Computational Multiscale
Methods for Tissue Biomechanics”(with M. Favino) World Congress on Computational Mechanics,
2014, Barcelona

[9] Stable mesh transfer for parallel multi-physics simulations in the minisymposium “Innovative Numerical
Approaches for Multi-physics Problems” World Congress on Computational Mechanics, 2014,
Barcelona (with T. Dickopf, P. Zulian)

[10] Coupling of finite element and finite volume methods for fluid-structure-interaction in a monolithic
scheme in the minisymposium “Computational Biomechanics”, World Congress on Computational
Mechanics, 2014, Barcelona (with J. Steiner)

[11] A lightweight approach to parallel adaptivity in electrophysiology in the minisymposium “Advances
in Computational Cardiovascular Modeling and Simulation”, World Congress on Computational
Mechanics, 2014, Barcelona (with D. Krause, S. Pozzi)

[12] Towards new directions of parallel computing - multilevel and domain decomposition in space and
time for large-scale nonlinear problems CADMOS day, Lausanne, November 2013

[13] Probabilistic Schmid Factors and Scatter of LCF Life, Symposium on Structural Durability in Darmstadt
(SoSDiD), May 2014. (H. Gottschalk, S. Schmitz, T. Seibel, G. Rollmann, R. Krause and T.
Beck)

[14] A lightweight approach to parallel adaptivity - design, implementation, and application in cardiac
electrophysiology (plenary), 42nd SPEEDUP Workshop on High-Performance Computing, Villigen,
Switzerland August 2013

[15] Parallel-in-time integration in high-performance computing (plenary) High Performance Computing
in Science and Engineering, HPCSE 2013, Ostrava

[16] Patching adaptivity for large scale problems - a new lightweight adaptive scheme and its application
in computational electrocardiology MAFELAP 2013, London, Minisymposium on “Large Scale
Computing” (U. Rüde)

[17] A Parallel Approach to Interface Description and Handling USNCCM 2013, Raleigh, Minisymposium
Computational Modeling of Embedded and Contact Interfaces (Laursen, Wriggers, Puso)

[18] Simulating the periodontal ligament: modeling, efficient simulation, and validation (with M. Favino),
ECCOMAS 2012, Vienna, September 2012, Minisymposium on Computational biomechanics

[19] Nonlinear Decomposition and Multilevel Strategies for Nonconvex minimization, ISMP 2012, Berlin,
Minisymposium on Nonlinear Programming (organized by M. Kocvara), August 2012

[20] Inherently parallel solution methods for problems in nonlinear biomechanics, Invited speaker: Workshop
on "Efficient Solvers in Biomedical Applications", July 2-5, 2012 in Graz-MariaTrost

[21] A posteriori error estimators for contact problems (with M. Walloth and A. Veeser), Euromech
Colloquium on Contact Problems, Corsica, March 2012

[22] Series of talks on nonsmooth minimization and multilevel methods, PhD course on Non-smooth
Analysis and Multilevel Methods, University of Copenhagen, (organized by K. Erleben)

[23] Dealing with Interfacial Constraints: Space-Time Connecting Discretization Schemes for Dynamic
Contact Problems and the Handling of Dirichlet Values Keynote talk, 11th US National Congress
on Computational Mechanics, Minneapolis, 2011, Minisymposium on Computational Modeling of
Embedded and Contact Interfaces

[24] Discretization and solution methods for dynamic contact problems Euromech Colloquium 516, Nonsmooth
Contact and Impact Laws in Mechanics, Grenoble, July 2011

[25] Bridging Dimensions and Scales - Coupling Strategies for Heterogeneous Models 10th US National
Congress on Computational Mechanics, Minneapolis, 2011 Keynote talk, IV European Conference
on Computational Mechanics, 2010, Minisymposium on Preconditioned iterative methods for
mechanical contact problems

[26] On Scales, Energy, and Mechanics — Parallel Solution Methods for Strongly Non-linear Problems
Plenary Talk, Ninth European MultiGrid Conference EMG 2008, Bad Herrenalb

[27] On the Multiscale Solution of Constrained Minimization Problems Plenary Talk, 17. International
Conference on Domain Decomposition Methods, Strobl, Austria, July 2006

[28] Four talks on ‘Frictional contact problems in linear elasticity and their efficient numerical solution’
10.10.2004–16.10.2004, Oberwolfach Seminar „Variational Inequalities - Analysis, Simulation and
Application“,

[29] Numerical Simulation in Biomechanics - A Flexible Multiscale Approach Minisymposium Computational
methods in virtual and computer planned surgery at the ECCOMAS 2008, Venice

[30] Parallel Solution Methods for Dynamic Contact Problems; Minisymposium Contact Mechanics:
Analysis, Modelling and Applications WCCM 2008, Venice

[31] 18. Int. Conference on DomainDecomposition Methods, 2008, Jerusalem: A Multiscale Approach
for Convex and Non-convex Constrained Minimization (C. Gross and R. Krause)

[32] 18. Int. Conference on DomainDecomposition Methods, 2008, Jerusalem: Efficient simulation of
multi-body contact problems on complex geometries (T. Dickopf and R. Krause)

[33] Information Transfer between non-matching meshes - concepts and implementation R. Krause, Tetrahedron
II, 2nd workshop on grid generation, Les Chesnay, INRIA

[34] A weak multiscale coupling approach K. Fackeldey, R. Krause, M. A. Schweitzer, Meshless Methods,Bonn, 2007.

[35] Nonsmooth decomposition methods for frictional contact problems in elasticity R. Krause, Chemnitzer
FEM-Symposium, 2007

[36] Nichtglatte Schwarzmethoden für restringierte Minimierungsprobleme, R. Krause, 17. September
2007 NIC-Seminar am John von Neumann Institut, Jülich

[37] Pointwise constraints in space and time - on the stability and numerical robustness of pointwise
constraints for stationary and dynamic problems in elasticity, R. Krause, ENUMATH, Graz, 2007

[38] Non–smooth decomposition methods for strongly local nonlinearities, R. Krause, USACM, San Francisco,
2007

[39] Efficient solution of non–smooth systems in biomechanics, R. Krause, ICIAM, Zürich, 2007

[40] Contact in joints: On the stability of multi-level solution methods for biphasic materials, S. Berrenberg,
R. Krause, ICIAM, Zürich, 2007

[41] A stable coupling approach for multiscale simulation K. Fackeldey, R. Krause, ICIAM, Zürich, 2007

[42] Robust implicit solution method for dynamic contact problems R. Krause, P. Deuflhard and S. Ertel,
Seventh World Congress on Computational Mechanics, July 2006, Los Angeles

[43] Localization techniques for time dependent contact problems, R. Krause, MAFELAP, 2006, London,

[44] A new stabilized implicit newmark scheme for dynamic contact problems R. Krause, P. Deuflhard
and S. Ertel, GAMM 2006, March 2006, Berlin

[45] Effiziente Diskretisierungs- und Lösungsmethoden für Kontaktprobleme oder Braucht ihr Knie einen
Mathematiker? R. Krause, January 2005, Dresdner Mathematisches Seminar, Dresden

Publications

[1] Favino, M., Pezzuto, S., Pozzi, S., Prinzen, F., Auricchio, A., and
Krause, R. Impact of mechanical deformation on pseudo-ecg in a strongly
coupled electromechanical model of the heart: a simulation study. submitted to
Europace, special volume TRM forum 2015, 2016.

[2] Krause, R. and Zulian, P. A parallel approach to the variational transfer
of discrete fields between arbitrarily distributed finite element meshes. SIAM
Journal on Scientific Computing, to appear, 2016.

[3] Quaglino, Alessio and Krause, Rolf. A Multigrid Method for the
Minimum-Cost-Flow Problem. Technical report, 2016.

[4] Krause, Rolf, M¨uller, Benjamin, and Starke, Gerhard. An Adaptive
Least-Squares Finite Element Method for the Signorini Problem. ICS
Preprint, 2015. submitted to Numerical Methods for Partial Differential Equations.
Peer Reviewed Publications in Journals

[5] Krause, R. and Zulian, P. A parallel approach to the variational transfer
of discrete fields between arbitrarily distributed finite element meshes. SIAM
Journal on Scientific Computing, to appear, 2016.

[6] Land, S., Gurev, V., Arens, S., Augustin, C. M., Baron, L., Blake,
R., Bradley, C., Castro, S., Crozier, A., Favino, M., Fastl, T. E.,
Fritz, T., Gao, H., Gizzi, A., Griffith, B. E., Hurtado, D. E.,
Krause, R., Luo, X., Nash, M. P., Pezzuto, S., Plank, G., Rossi,
S., Ruprecht, D., Seemann, G., Smith, N. P., Sundnes, J., Rice,
J. J., Trayanova, N., Wang, D., Jenny Wang, Z., and Niederer,
S. A. Verification of cardiac mechanics software: benchmark problems and
solutions for testing active and passive material behaviour. Proceedings of the
Royal Society of London A: Mathematical, Physical and Engineering Sciences,
471(2184), December 2015.

[7] Sgrignani, J., Olsson, S., Ekonomiuk, D., Genini, D., Krause, R.,
Catapano, C. V., and Cavalli, A. Molecular Determinants for Unphosphorylated
STAT3 Dimerization Determined by Integrative Modeling. Biochemistry,
54(35):5489–5501, September 2015.

[8] Favino, M., Bourauel, C., and Krause, R. A non-linear poroelastic model of the periodontal ligament.International Journal of Computational Methods in Engineering Science and Mechanics, Special Issue on Computational Multi-Scale Methods for Tissue Biomechanics, 2015.

[9] Krause, D., Dickopf, T., Potse, M., and Krause, R. Towards a
large-scale scalable adaptive heart model using shallow tree meshes. Journal of Computational Physics, 2015. http://dx.doi.org/10.1016/j.jcp.2015.05.005.

[10] Krause, D. and Krause, R. Enabling local time stepping for reactiondiusion equations via space-time finite elements on shallow tree meshes. Applied Mathematics and Computation, 2015.

[11] Krause, R., Rigazzi, A., and Steiner, J. A parallel multigrid method
for constrained minimization problems and its application to friction, contact,
and obstacle problems. Computing and Visualization in Science, 2015.

[12] Kreienb¨uhl, A., Naegel, A., Ruprecht, D., Speck, R., Wittum,
G., and Krause, R. Numerical simulation of skin transport using parareal.
Computing and Visualization in Science, 2015.

[13] Kroon, W., Lumens, J., Potse, M., Suerder, D., Klersy, C., Regoli,
F., Murzilli, R., Moccetti, T., Delhaas, T., Krause, R.,
Prinzen, F. W., , and Auricchio, A. In-vivo electromechanical assessment
of heart failure patients with prolonged QRS duration. Heart Rhythm,
2015.

[14] Nguyen, U. C., Potse, M., Regoli, F., Caputo, M. L., Conte,
G., Murzilli, R., Muzzarelli, S., Moccetti, T., Prinzen, F. W.,
Krause, R., , and Auricchio., A. An in-silico analysis of the e↵ect of
heart position and orientation on the ecg morphology and vectorcardiogram parameters
in patients with heart failure and intraventricular conduction defects.
J. Electrocardiol., 48:617–625, 2015.

[15] Piazzese, C., Carminati, M., Colombo, A., Krause, R., Potse, M.,
Auricchio, A., Weinert, L., Tamborini, G., Pepi, M., Lang, R.,
and EG, C. Segmentation of the left ventricular endocardium from magnetic
resonance images by using di↵erent statistical shape models. J Electrocardiol.,
2015.

[16] Krause, R., Veeser, A., and Walloth, M. Efficient and reliable
residual-type a posteriori error estimator for the Signorini problem. Numerische
Mathematik, (2012-02), July 2014.

[17] Arteaga, A., Ruprecht, D., and Krause, R. A stencil-based implementation
of parareal in the C++ domain specific embedded language STELLA.
Applied Mathematics and Computation, 2014.

[18] Conen, L., Dolean, V., Krause, R., and Nataf, F. A coarse space for
heterogeneous Helmholtz problems based on the Dirichlet-to-Neumann operator.
J. Comput. Appl. Math., 271(0):83 – 99, 2014.

[19] Conen, L. and Krause, R. Addendum to “A coarse space for heterogeneous
Helmholtz problems based on the Dirichlet-to-Neumann operator”.
Journal of Computational and Applied Mathematics, 271:83–99, 2014.

[20] Dickopf, T., Krause, D., Krause, R., and Potse, M. Analysis of
a lightweight parallel adaptive scheme for the solution of the monodomain
equation. SIAM Journal on Scientific Computing, 36(2):163–189, 2014.

[21] Dickopf, T. and Krause, R. Evaluating local approximations of the L2-
orthogonal projection between non-nested finite element spaces. Numerical
Mathematics: Theory, Methods, and Applications, 7(3):288–316, 2014.

[22] Krause, D., Fackeldey, K., and Krause, R. A parallel multiscale
simulation toolbox for coupling molecular dynamics and finite elements. In
Griebel, M., editor, Singular Phenomena and Scaling in Mathematical Models,
pages 327–346. Springer International Publishing, 2014.

[23] Potse, M., Krause, D., Kroon, W., Murzilli, R., Muzzarelli, S.,
Regoli, F., Caiani, E., Prinzen, F. W., Krause, R., and Auricchio,
A. Patient-specific modelling of cardiac electrophysiology in heart-failure patients.
Europace, 16(11):iv56–iv61, 2014. doi: 10.1093/europace/euu257.

[24] Speck, R., Ruprecht, D., Emmett, M., Minion, M., Bolten, M.,
and Krause, R. A multi-level spectral deferred correction method. BITN,
2014.

[25] Baginski, F., Croce, R., Gillmor, S., and Krause, R. Numerical
investigations of the role of curvature in strong segregation problems on a
given surface. Applied Mathematics and Computation, 2013.

[26] Schmitz, S., Seibel, T., Beck, T., Rollmann, G., Krause, R., and
Gottschalk, H. A probabilistic model for LCF. Computational Materials
Science, 79:584–590, 2013.

[27] Winkel, M., Speck, R., H¨ubner, H., Arnold, L., Krause, R., and
Gibbon, P. A massively parallel, multi-disciplinary Barnes-Hut tree code
for extreme-scale N-body simulations. Computer Physics Communications,
183(4):880–889, April 2012.

[28] Badea, L. and Krause, R. One- and two-level multiplicative Schwarz
methods for variational and quasi-variational inequalities of the second kind.
Numerische Mathematik, 120(4):573/599, 2012.

[29] Krause, R. and Walloth, M. Presentation and comparison of selected
algorithms for dynamic contact based on the Newmark scheme. Applied Numerical
Mathematics, 62:1393–1410, 2012.

[30] Potse, M., Krause, D., Bacharova, L., Krause, R., Prinzen,
F. W., and Auricchio, A. Similarities and di↵erences between electrocardiogram
signs of left bundle-branch block and left-ventricular uncoupling.
Europace, 14(suppl 5):v33–v39, 2012.

[31] Ruprecht, D. and Krause, R. Explicit Parallel-in-time Integration of a
Linear Acoustic-Advection System. Computers & Fluids, 59:72–83, 2012.

[32] Speck, R., Ruprecht, D., Krause, R., Emmet, M., Minion, M.,
Winkel, M., and Gibbon, P. A massively space-time parallel N-body
solver. In Proceedings of the Supercomputing Conference 2012, Salt Lake
City, Salt Lake City, USA, 2012. (SC 12 has a 20% acceptance rate).

[33] Drolshagen, M., Keilig, L., Hasan, I., Reimann, S., Deschner, J.,
Brinkmann, K., Krause, R., Favino, M., and Bourauel, C. Development
of a novel intraoral measurement device to determine the biomechanical
characteristics of the human periodontal ligament. Journal of Biomechanics,
44(11), July 2011.

[34] Bacharova, L., Mateasnik, A., Krause, R., Prinzen, F., Auricchio,
A., and Potse, M. The e↵ect of reduced intercellular coupling on
electrocardiographic signs of left ventricular hypertrophy. Journal of Electrocardiology,
44(5):571–576, 2011.

[35] Fackeldey, K., Krause, D., Krause, R., and Lenzen, C. Coupling
molecular dynamics and continua with weak constraints. SIAM Journal on
Multiscale Modeling & Simulation, 9(4):1459–1494, 2011.
[36] Favino, M., Groß, C., Drolshagen, M., Keilig, L., Deschner, J.,
Bourauel, C., and Krause, R. Validation of a heterogeneous elasticbiphasic
model for the numerical simulation of the PDL. Computer Methods
in Biomechanics and Biomedical Engineering, 2011.

[37] Krause, R. and Walloth, M. A family of space-time connecting
discretization schemes for elastodynamic contact problems with local impact
detection. International Journal for Numerical Methods in Engineering,
200:3425–3438, 2011.

[38] Papadopoulou, K., Keilig, L., Eliades, T., Krause, R., J¨ager, A.,
and Bourauel, C. The time-dependent biomechanical behaviour of the
periodontal ligamentan in vitro experimental study in minipig mandibular tworooted
premolars. European Journal of Orthodontics, 2011. First published
online November 22, 2011.

[39] Krause, R. and Walloth, M. A time discretization scheme based on
Rothe’s method for dynamical contact problems with friction. Computer Methods
in Applied Mechanics and Engineering, 199:1–19, December 2009.
[40] Krause, R. and Mohr, C. Level set based multi-scale methods for large
deformation contact problems. Applied Numerical Mathematics, 61(4):428–
442, April 2009.

[41] Dickopf, T. and Krause, R. Efficient simulation of multi-body contact
problems on complex geometries: A flexible decomposition approach using
constrained minimization. International Journal for Numerical Methods in Engineering,
77(13):1834–1862, 2009.

[42] Fackeldey, K. and Krause, R. Multiscale coupling in function space
- weak coupling between molecular dynamics and continuum mechanics. International
Journal for Numerical Methods in Engineering, 79(12):1517–1535,
2009.

[43] Groß, C. and Krause, R. On the convergence of recursive Trust–Region
methods for multiscale non-linear optimization and applications to non-linear
mechanics. SIAM Journal on Numerical Analysis, 47(4):3044–3069, 2009.

[44] Krause, R. A non-smooth multiscale method for solving frictional two-body
contact problems in 2d and 3d with multigrid efficiency. SIAM Journal on
Scientific Computing, 31(2):1399–1423, 2009.

[45] Deuflhard, P., Krause, R., and Ertel, S. A contact–stabilized Newmark
method for dynamical contact problems. International Journal for Numerical
Methods in Engineering, 73(9):1274 – 1290, 2008.

[46] Kornhuber, R., Krause, R., Sander, O., Deuflhard, P., and Ertel,
S. A monotone multigrid solver for two body contact problems in biomechanics.
Computing and Visualization in Science, 11(1):3–15, 2008.

[47] Krause, R. On the multiscale solution of constrained minimization problems.
In Proceedings of the 17th International. Conference on Domain Decomposition
Methods, 2007.

[48] Kornhuber, R. and Krause, R. Robust multigrid methods for vectorvalued
Allen–Cahn equations with logarithmic free energy. Computing and
Visualization in Science, 9(2):103–116, 2006.

[49] Krause, R. From inexact active set strategies to nonlinear multigrid methods,
volume 27 of Lecture Notes in Applied and Computational Mechanics, pages
13–21. Springer, 2006.

[50] Krause, R. and Sander, O. Automatic construction of boundary
parametrizations for geometric multigrid solvers. Computing and Visualization
in Science, 9(1):11–22, 2006.

[51] Krause, R. and Oliver, S. Fast solving of contact problems on complicated
geometries. In Kornhuber, R. e. a., editor, Domain Decomposition
Methods in Science and Engineering, volume 40 of Lecture Notes in Computational
Science and Engineering, pages 495–502. Springer, Berlin, 2005.

[52] Krause, R. and Kornhuber, R. On multigrid methods for vector-valued
Allen-Cahn equations. In Proceedings of the fourteenth international conference
on domain decomposition methods, 2003.

[53] Krause, R. and Wohlmuth, B. Monotone methods on nonmatching
grids for nonlinear contact problems. SIAM Journal on Scientific Computing,
25(1):324–347, 2003.

[54] Krause, R. and Wolmuth, B. A Dirichlet-Neumann type algorithm
for contact problems with friction. Computing and Visualization in Science,
5(3):139–148, 2002.

[55] Kornhuber, R. and Krause, R. Adaptive multigrid methods for Signorini’s
problem in linear elasticity. Computing and Visualization in Science,
4:9–20, 2001.

[56] Krause, R. and Wohlmuth, B. Domain decomposition methods on nonmatching
grids and some applications to linear elasticity problems. Z. Angew.
Math. Mech., 81(1):21–24, 2001.

[57] Krause, R. and Wohlmuth, B. A multigrid method based on the unconstrained
product space arising from mortar finite element discretizations.
SIAM Journal on Numerical Analysis, 39(1):192–213, 2001.

[58] Krause, R. and Wohlmuth, B. Nonconforming domain decomposition
methods techniques for linear elasticity. East–West Journal of Numerical Mathematics,
8(3):177–206, 2000.

Peer Reviewed Publications in Series and Proceedings

[59] Krause, Rolf, Krause, Dorian, Favino, Marco, and Ruprecht,
Daniel. Parallel Methods in Cardiac Simulation – from lightweight adaptivity
to Coupled Models. In P., N. and Budyn, E., editors, 4th International
Conference on Computational and Mathematical Biomedical Engineering
- CMBE2015, July 2015.

[60] Speck, R., Ruprecht, D., Minion, M., Emmett, M., and Krause,
R. Inexact spectral deferred corrections. In Domain Decomposition Methods
in Science and Engineering XXII, Lecture Notes in Computational Science and
Engineering, 2015.

[61] Steiner, J., Ruprecht, D., Speck, R., and Krause, R. Convergence
of parareal for the Navier-Stokes equations depending on the Reynolds number.
In Lecture Notes in Computational Science and Engineering, volume 103, pages
195–202. Springer, 2015.

[62] Ruprecht, D., Speck, R., and Krause, R. Parareal for di↵usion problems
with space- and time-dependent coefficients. In Domain Decomposition
Methods in Science and Engineering XXII, Lecture Notes in Computational
Science and Engineering, 2014. Accepted.

[63] Speck, R., Ruprecht, D., Emmett, M., Bolten, M., and Krause,
R. A space-time parallel solver for the three-dimensional heat equation. In Parallel
Computing: Accelerating Computational Science and Engineering (CSE),
volume 25 of Advances in Parallel Computing, pages 263 – 272, 2014.

[64] Speck, R., Ruprecht, D., Emmett, M., Bolten, M., and Krause,
R. A space-time parallel solver for the three-dimensional heat equation. In Parallel
Computing: Accelerating Computational Science and Engineering (CSE),
volume 25 of Advances in Parallel Computing, pages 263 – 272. IOS Press,
2014.

[65] Schmitz, S., Rollmann, G., Gottschalk, H., and Krause, R. Probabilistic
Analysis of LCF Crack Initiation Life of a Turbine Blade under Thermomechanical
Loading. In Proceedings of the Seventh International Conference
on Low Cycle Fatigue, September 2013. Aachen, Germany.

[66] Croce, R., Ruprecht, D., and Krause, R. Parallel-in-space-and-time
simulation of the three-dimensional, unsteady Navier-Stokes equations for incompressible
flow. In Bock, H.-G., Phu, H. X., Rannacher, R., and
Schloeder, J., editors, Modeling, Simulation and Optimization of Complex
Processes, Proceedings of the Fifth International Conference on High Performance
Scientific Computing, March 5-9, 2012, Hanoi, Vietnam. Springer,
2013.

[67] Groß, C., Krause, R., and Poletti, V. A numerical remark on the
time discretization of contact problems in nonlinear elasticity. In Cangiani,
A., Davidchack, R. L., Georgoulis, E., Gorban, A. N., Levesley,
J., and Tretyakov, M. V., editors, Numerical Mathematics and Advanced
Applications 2011, pages 165–173. Springer Berlin Heidelberg, 2013.

[68] Dickopf, T. and Krause, R. A contact method for parametric finite
elements. Lecture Notes in Computational Science and Engineering, 2012.
Proceedings of the 20th international conference on domain decomposition
methods.

[69] Dickopf, T. and Krause, R. Numerical study of the almost nested case
in a multilevel method based on non-nested meshes. Lecture Notes in Computational
Science and Engineering, 2012. Proceedings of the 20th international
conference on domain decomposition methods.

[70] Favino, M., Krause, R., and Steiner, J. An efficient preconditioning
strategy for Schur complements arising from biphasic models. In Biomedical
Engineering / 765: Telehealth / 766: Assistive Technologies, 2012.

[71] Favino, M., Krause, R., and Steiner, J. Heterogeneous coupling: A
comparison of two approaches for the modeling of thin structures. In Proceedings
of the Ninth IASTED International Conference on Biomedical Engineering
(BioMed 2012), 2012.

[72] Krause, D., Potse, M., Dickopf, T., Krause, R., Auricchio, A.,
and Prinzen, F. Hybrid parallelization of a large-scale heart model. In
Keller, R., Kramer, D., and Weiss, J.-P., editors, Facing the Multicore
- Challenge II, volume 7174 of Lecture Notes in Computer Science, pages 120–
132. Springer Berlin Heidelberg, 2012. Available as ICS Preprint 2011-04.

[73] Krause, R. and Ruprecht, D. Hybrid space-time parallel solution of
Burger’s equation. 2012. Proceedings of the 21st International Conference on
Domain Decomposition Methods.

[74] Speck, R., Ruprecht, D., Krause, R., Emmett, M., Minion, M.,
Winkel, M., and Gibbon., P. Integrating an N-body problem with SDC
and PFASST. 2012. Proceedings of the 21st International Conference on
Domain Decomposition Methods.

[75] Speck, R., Krause, R., and Gibbon, P. Parallel remeshing in tree codes
for vortex particle methods. In Bosschere, K. D., D’Hollander, E. H.,
Joubert, G. R., Padua, D., Peters, F., and Sawyer, M., editors,
Applications, Tools and Techniques on the Road to Exascale Computing, volume
22 of Advances in Parallel Computing, Gent, Belgium, 2012.

[76] Fackeldey, K., Krause, D., and Krause, R. Numerical validation
of a constraints-based multiscale simulation method for solids. In Meshfree
Methods for Partial Di↵erential Equations V, number 79 in Lecture Notes in
Computational Science and Engineering, pages 141–154, 2011.

[77] Krause, D. and Krause, R. Parallel scale-transfer in multiscale MD-FE
coupling using remote memory access. In e-Science Workshops, pages 66–73,
2011.

[78] Krause, D., Potse, M., Dickopf, T., Krause, R., Auricchio, A.,
and Prinzen, W. F. Poster: hybrid parallelization of a realistic heart model.
In SC Companion, pages 13–14, 2011.

[79] Dickopf, T. and Krause, R. Weak information transfer between nonmatching
warped interfaces. In Domain Decomposition Methods in Science
and Engineering XVIII, volume 70 of Lecture Notes in Computational Science
and Engineering, pages 283–290. 09 2009.

[80] Groß, C. and Krause, R. A recursive trust–region method for non-convex
constrained minimization. In Domain Decomposition Methods in Science and
Engineering XVIII, volume XVI of Lecture Notes in Computational Science and
Engineering, pages 137–144, 09 2009.

[81] Groß, C., Krause, R., and Walloth, M. Nonlinear decomposition
methods in elastodynamics. In Kreiss, G., L¨otstedt, P., Malqvist,
A., and Neytcheva, M., editors, Numerical Mathematics and Advanced
Applications 2009, number 2009-06, 11 2009. Proceedings of Enumath 2009.

[82] Konstantin Fackeldey, D. K. and Krause, R. Weak coupling algorithms
in multiscale simulations. In Proceedings of the third Inter. Confer. on
Comp. Meth. for Coupled Problems in Science and Engrg., 2009. Available as
ICS Preprint 2009-02.

[83] Berrenberg, S., Groß, C., and Krause, R. Numerical simulation in
biomechanics: A flexible approach. In 8th World Congress on Computational
Mechanics and 5th European Congress on Computational Methods in Applied
Sciences and Engineering, 07 2008.

[84] Fackeldey, K. and Krause, R. CM/MD coupling - a function space
oriented multiscale-coupling approach. PAMM, 8(1):10495, 2008.

[85] Fackeldey, K., Krause, R., and Schweitzer, M. Stability of energy
transfer in the weak coupling method. In Meshfree Methods for Partial Differential
Equations IV, volume 79 of Lecture Notes in Computational Science
and Engineering, pages 111–119, 2008.

[86] Fackeldey, K. and Krause, R. Solving frictional contact problems with
multigrid efficiency. In Proc.of the 16th International Conference on Domain
Decomposition Methods, volume 55 of Lecture Notes in Computational Science
and Engineering, pages 547–554, 2005.

[87] Krause, R. and Wolmuth, B. Multigrid methods for mortar finite elements.
E. Dick, K. Riemslagh, J. Vierendeels (Eds.) Multigrid Methods VI,
Lecture Notes in Computational Science and Engeneering Springer, Berlin-
Heidelberg-New York, 14:136–142, 2000.

[88] Bornemann, F. A. and Krause, R. Classical and cascadic multigrid - a
methodological comparison. In Proc. 9th Internationall Conference on Domain
Decomposition Methods, Ullensvang, Norway (1996), pages 64–71, 1998.
Book Chapters

[89] Grillo, A., Giverso, C., Favino, M., Krause, R., Lampe, M., and
Wittum, G. Mass transport in porous media with variable mass. In Delgado,
J., Lima, A. G. B., and Silva, M. V., editors, Numerical Analysis of Heat and Mass Transfer in Porous Media, volume 27 of Advanced Structured
Materials, pages 27–61. Springer Berlin Heidelberg, 2012.

Books

[90] Dickopf, Thomas, Gander, Martin J., Halpern, Laurence,
Krause, Rolf, and Pavarino, Luca F. Domain Decomposition Methods
in Science and Engineering XXII. Lecture Notes in Science and Engineering.
2016.

Proceedings

[91] Peternier, A., De Filippi, M., Pasquali, P., Cantone, A.,
Krause, R., Vitulli, R., Ogushi, F., and Meroni, A. Performance
analysis of GPU-based SAR and Interferometric SAR image processing. In
Proc. of the 4th Asia-Pacific Conference on Synthetic Aperture Radar (APSAR),
September 2012.

[92] Favino, M., Drolshagen, M., Bourauel, C., and Krause, R.
A non-linear biphasic model for the periodontal ligament: Modelling and
simulation. In Proceedings of Computer Methods in Biomechanics and
Biomedical Engineering (CMBBE) 2012, Berlin. ARUP, 2012. Available in
www.cmbbe2012.cf.ac.uk.

[93] Krause, R. and Johannes, S. Cosserat-rods and elastic bodies: On the
numerical simulation of a coupled system. In Middleton, J. and Jacobs,
C., editors, CMBBE2010 : 9th International Symposium on Computer methods
in Biomechanics and Biomedical Engineering, Valencia, Spain, Valencia,
Spain, November 2010. Arup, Solihull.

[94] Groß, C., Krause, R., and Steiner, J. Heterogeneous coupling: A
comparison of two approaches for the modeling of thin structures. PAMM,
10(1):649–650, 2010.

[95] Dickopf, T., Groß, C., Krause, R., Mohr, C., and Steiner, J.
Efficient simulation techniques for heterogeneous models in biomechanics. In
Proceedings of the 8th International Symposium on Computer Methods in
Biomechanics and Biomedical Engineering, 2008.

[96] Fackeldey, K., Krause, D., and Krause, R. Quadrature and implementation
of the weak coupling method. In Proceedings of the fourth Int.
Conf. Multiscale Materials Modeling, pages 62–65, 2008.

[97] Berrenberg, S. and Krause, R. Efficient parallel simulation
of biphasic materials in biomechanics. Sixth International
Congress on Industrial Applied Mathematics (ICIAM07) and GAMM Annual
Meeting, Z¨urich 2007, 7(1):1121101–1121102, December 2007.
http://dx.doi.org/10.1002/pamm.200700901.

[98] Dutz, H., Krause, R., and Raccanelli, A. A finite element model for
the thermal transport in solid targets. In Proceedings of The 17th International
Spin Physics Symposium (SPIN2006), 2007.

[99] Fackeldey, K. and Krause, R. Weak coupling in function space: a
unifying coupling approach for multiscale simulations. In PAMM, volume 7,
pages 2020113 – 2020114, 2007.

[100] Deuflhard, P., Ertel, S., Kornhuber, Krause, R., Sander, R.,
and O. Patient-specific simulation of dynamic stress distribution in the
human knee. Journal of Biomechanics, 39, 2006.

Technical Reports and Preprints

[101] Beck, T., Gottschalk, H., Krause, R., Rollmann, G., Schmitz,
S., and Seibel, T. Probabilistische Lebensdauerberechnung f¨ur Design bei
extremen Temperaturen. Schlußbericht, Teilverbund Expansion, Vorhabengruppe
4.1 Gas- und Dampfturbinenschaufeln, AG Turbo, 2014.

[102] Groß, C. and Krause, R. On the globalization of ASPIN employing
Trust-Region control strategies - convergence analysis and numerical examples.
Technical Report 2011-03, Institute of Computational Science, University
of Lugano, 2011.

[103] Conen, L., Groß, C., and Krause, R. The linear algebra module in
obslib++ - description, comparisons and numerical results. Technical Report
2010-01, Institute of Computational Science, University of Lugano, 2010.

[104] Groß, C. and Krause, R. Import of geometries and extended informations
into ObsLib++ using the exodus ii and exodus parameter file formats.
INS preprint 0712, Institute for Numerical Simulation, January 2008.

Patent

[105] Raccanelli, A. and Krause, R. Vorrichtung zur Erzeugung eines homogenen
Magnetfelds und Optimierungsverfahren. Technical Report PT 1.2415,
University of Bonn and FZT Juelich, 2008. Patent.

Theses

[106] Krause, R. Monotone Multigrid Methods for Signorini’s Problem with
Friction. PhD thesis, Freie Universit¨at Berlin, Fachbereich Mathematik und
Informatik, 2001.

[107] Krause, R.Uber die Konvergenz des kaskadischen Mehrgitterverfahrens.
Freie Universit¨at Berlin, Fachbereich Mathematik und Informatik, 1996.
Diploma thesis.

Software Libraries

[108] Krause, D. and Krause, R. MACI. A Parallel Multiscale Simulation
Toolbox for Coupling Molecular Dynamics and Finite Elements.

[109] Krause, R., Dickopf, T., and Zulian, P. Cutlib. Efficient parallel
computation of intersections between arbitrarily distributed meshes in 2D
and 3D.

[110] Krause, R., Groß, C., Dickopf, T., Conen, L., Favino, M.,
Steiner, J., and Krause, D. ObsLib++. An object oriented toolbox
for solving constrained nonlinear and nonsmooth minimization problems (realized
within the framework of UG).

[111] Zulian, P. and Krause, R. MoonoLith. Massively Parallel Variational
Transfer of Discrete Fields between arbitrarily Distributed Surface and Volume

Meshes.

[112] Schneider, T., Zulian, P., Azadmanesh, M. R., Krause, R., and
Hauswirth, M. Vestige a visual debugger for geometry based software.
Visual Debugging in Computational Science, 2015.

(Co-) Organized Conferences

Conferences, Colloquia, and Workshops

upcoming Fifth Parallel-in-time IntegrationWorkshop, November 27 - December 2, 2016, Banff, with Dr. M. Emmett,
Prof. .Dr. M. Gander (Université de Genève), Prof. Dr. R. Haynes (Memorial University of
Newfoundland), Prof. Dr. M. Minion (Stanford University)

upcoming PASC 16 Conference, Lausanne, Co-chair for the track "computer science and mathematics" (Chair:
B. Chopard, Uni Lausanne)


• TRM Forum on Computer Simulation and Experimental Assessment of Cardiac Function, December
  2015, Lugano, with Prof. Dr. L. Kappenberger and Prof. Dr. A. Auricchio
  
• Speedup workshop on Fluid Structure Interaction, 10.9./11.9.2015, with P. Arbenz (ETH), , H.
  Burkhart (U Basel), B. Chopard (U Geneva), S. Deparis (EPF Lausanne), A. Janka (EIA Fribourg),
  H. Nordborg (HSR), D. Obrist (U Bern), V. Rezzonico (EPF Lausanne), J. VandeVondele (ETH
  Zurich)
  
• MALT (iMaging And eLectrical Technologies), 30.4/1.5.2015, Lugano, with Prof. Dr. M. Potse and
  Prof. Dr. A. Auricchio
  
• PMAA - Parallel Matrix Algorithms and Applications, July 2–4 2013, Lugano. (with P. Arbenz
  (ETH), O. Schenk (USI))
  
• TRM Forum on Computer Simulation and Experimental Assessment of Cardiac Function, December
  2013, Lugano, with Prof. Dr. L. Kappenberger and Prof. Dr. A. Auricchio
  
• International conference on Domain Decomposition Methods: DD XXII (Main organizer), September
  2013, Lugano
  
• Domain Decomposition Methods for Optimization with PDE-constraints International conference
  (Main organizer Prof. Dr. M. Gander), September 2013, Centro Stefano Franscini
  
• TRM Forum on Computer Simulation and Experimental Assessment of Cardiac Function, December
  4th-7th 2011, Lugano, with Prof. Dr. L. Kappenberger and Prof. Dr. A. Auricchio
  
• Swiss Numerics Colloquium 2011, May 2011, Lugano, with Prof. Dr. M. Parinello, USI/ETH,
  Prof. Dr. I. Horenko, USI
  
• Advances in Computational Science, International workshop, June 2011, Lugano, with M. Parinello,
  USI/ETH, I. Horenko, USI
  

Parallel-in-time Integration Schemes, International Workshop, June 2011, Lugano

Minisymposia (selected)
upcoming Minisymposium on Cardiac Simulation, 7ECM, 2016, Berlin, with M. Weiser (ZIB)


• Minisymposium in Parallel and Advanced Time Integration Methods, PASC 15 Conference, 2015,
  ETH Zurich, with M. Minion (LBNL), M. Grote (U Basel), D. Ruprecht (USI)
  
• Minisymposium in , PASC 15 Conference, 2015, ETH Zurich, with M. Minion (LBNL), M. Grote
  (U Basel), D. Ruprecht (USI)
  
• Minisymposium on Large Scale Solution Methods for Coupled and Non-linear Problems, SIAM,
  Conference on Computational Science and Engineering, Salt-Lake City, 2015
  
• Minisymposium on Modeling and Solver Techniques for Fluid Structure Interaction, PMAA 2014,
  Lugano, with J. Steiner
  
• Minisymposium Space Time Parallel Methods: Algorithms, Implementation and Applications, SIAM
  CSE 2013, Boston, with Dr. M. Emmet, Lawrence Berkeley National Laboratory, Dr. R. Speck.
  USI/Jülich, Dr. D. Ruprecht, USI
  
• Minisymposium Optimization in HPC, SIAM CSE 2013, Boston, with Prof. Dr. V. Schulz, Trier
  
• Minisymposium Domain Decomposition in Computational Cardiology, 21st International conference
  on domain decomposition methods, Rennes, 2012, with Prof. Dr. L. Pavarino, Milano
  
• Minisymposium Large-Scale Nonlinear Optimization, WCCM 2012, Sao Paulo, with
  Prof. Dr. O. Schenk, USI
  
• Minisymposium High Performance Methods for Strongly Nonlinear Problems in Computational Science,
  WCCM 2010, Sydney, with Dr. C. Groß, USI
  
• Minisymposium Optimal Algorithms for Contact Problems, 20th International conference on Domain
  Decomposition Methods, with Z. Dostal, Ostrava
  
• Minisymposium Domain Decomposition Methods for Non-smooth Quadratic and Nonlinear Programming
• Problems 20th International conference on Domain Decomposition Methods, with C.
  Groß
  
• Minisymposium PDE Constrained Optimization, 18th International conference on Domain Decomposition
  Methods, with Prof. Dr. R. Kornhuber, Berlin and Prof. Dr. R. Hoppe, Augsburg/Houston.
  
• ICIAM 2007, Zürich: Minisymposia Mathematics and mechanics in structural and functional biology:
  material modeling and mathematics and mechanics in structural and functional biology: simulation
  organized with C. Hellmich, Wien.
  
• MAFELAP 2006, London; Minisymposium Contact problems and biomechanics organized with
  Prof. Dr. Z. Dostál, Ostrava

Awards

Journals
[1] Associate editor for SIAM Journal on Scientific Computing (SISC) (2009-2015)
[2] Associate editor for Springer Journal CVS “Computing and Visualization in Science”
[3] Guest Editor PAMM (2014)

Books
Domain Decomposition Methods in Science and Engineering XXII, Springer, 2016

Series
Series in Computational Science, Verlag Hartung Gorre. Editors: I. Horenko, R. Krause, O. Schenk

Graduate Education

[1] Swiss Graduate school “FoMICS - Foundations in Mathematics and Informatics for Computer Simulations in Science and Engineering” within the
SUK-program “Doktoratsprogramme”. Leading House: Università della Svizzera italiana, Lugano, with participants from CSCS, ETH Zurich, EPF
Lausanne, University of Basel, University of Geneva, and University Bern. 01/2013-12/2016

[2] Participation in the Swiss Graduate School “Computational Toolbox” within the SUK-program “Doktoratsprogramme” Leading House: University
of Basel with participants from USI and ETH Zurich. 01/2013-12/2016

former Participation in the post graduate program (DFG-Graduiertenschule) “Bionics – interaction on boundary layers” with the PhD scholarship:
“Design of a biomimetic infrared (IR) sensor: Numerical simulation of the transduction-process” 08/2008-07/2011

former Participation in the “Bonn International Graduate School in Mathematics within the excellence cluster “Mathematics: Foundations, Models,
Applications” 04/2007-09/2012

Selected Collaboration Partners

[1] Cardiac simulation: Prof.Dr. A. Auricchio (Cardio Centro Ticino); Prof. Dr. F.Prinzen (University of Maastricht); Dr. J.-M. Vesin (EPFL);
Prof. Dr. E. Caiani (Politecnico di Milano)

[2] Contact problems: Prof. Dr. Z.Dostál (University of Ostrava); Dr. V. Vondrák (University of Ostrava)

[3] Solvers in HPC (SPP 1648): Prof. Dr. G. Wittum (University of Frankfurt); Prof. Dr. W. Hackbusch (Max Planck Institute for Mathematics in the
Sciences, Leipzig); Prof. Dr. W. Resch (HLRS Stuttgart); Prof. Dr. V. Schulz (University of Trier)

[4] Biomechanics: Dr. R. Sobottke (Klinik und Poliklinik für Orthopädie, University of Cologne); Prof. Dr. C. Bourauel (University of Bonn)

[5] Two-Phase flow: Prof. Dr. F. Baginski (Dept. of Mathematics, The George Washington University)

[6] Parallel in time integration: Prof. Dr. M. Minion (Institute for Computational and Mathematical Engineering, Stanford University);
Dr. M. Emmett (Lawrence Berkeley National Laboratory)

[7] HPC: Dr. W. Sawyer (CSCS, Lugano)

[8] Dr. A. Grillo (Politecnico di Torino)

Currently working group

2 student assistant
7 PhD students + 3 co-advised PhD students in cooperations with IRB/IOSI/SUPSI
1 visiting PhD student (SwissEx)
10 PostDocs