Publications

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2007

  • Fackeldey, K (2007). Weak Coupling in Function Space: a Unifying Coupling Approach for Multiscale Simulations. In PAMM, pages 2020113 - 2020114. [More] [Bibtex] [RIS]
  • LeBlanc, A. -., Vinet, A. & Coronel, R. (2007). The role of extracellular potassium transport in computer models of the ischemic zone. mbec, 45(12), 1187-1199. [More] [Bibtex] [RIS]
  • LeBlanc, A. -., Vinet, A., Coronel, R. & Falcao, S. (2007). The effect of lesion size and tissue remodeling on ST deviation in partial-thickness ischemia. Heart Rhythm, 4(2), 200-206. [More] [Bibtex] [RIS]
  • Vinet, A. & Chen, W. (2007). Dynamics of Sustained Reentry in a Loop Model with Discrete Gap Junction Resistance. Phys. Rev. E., 76, 021928. [More] [Bibtex] [RIS]

2006

  • Krause & Rolf (2006). From inexact active set strategies to nonlinear multigrid methods, pages 13-21. [More] [Bibtex] [RIS]
  • Schütte, C., Dellnitz, M., Molo, M. H., Metzner, P. & Preis, R (2006). Graph Algorithms for Dynamical Systems. In Mielke & Alexander (editors), Analysis, Modeling and Simulation of Multiscale Problems. Springer Berlin Heidelberg. [More] [Digital version] [Bibtex] [RIS]
  • Schutte, C., Vanden-Eijnden, E. & Metzner, P. (2006). Illustration of transition path theory on a collection of simple examples. The Journal of Chemical Physics, 125(8), 084110. [More] [Digital version] [Bibtex] [RIS]
  • Schütte, C. & Schmidt-Ehrenberg, J (2006). Set-oriented dimension reduction: Localizing principal component analysis via hidden Markov models. In Bertholda, M. R., Glen, R. & Fischer, I. (editors), CompLife 2006, pages 98-115. Springer, Berlin Heidelberg. [More] [Digital version] [Bibtex] [RIS]
  • Fischer, A., Schütte, C. & Dittmer, E. (2006). Automated model reduction for complex systems exhibiting metastability. Mult. Mod. Sim., 5(3), 802-827. [More] [Digital version] [Bibtex] [RIS]
  • Fischer, A., Schütte, C. & Dittmer, E. (2006). Automated Model Reduction for Complex Systems exhibiting Metastability. Mult. Mod. Sim., 5(3), 802-827. [More] [Bibtex] [RIS]
  • E, A. Y. & Huisinga, W (2006). Adaptive Approach for Modelling Variability in Pharmacokonetics. In Berthold, M. R., Glen, R. & Fischer, I. (editors), Computational Life Sciences II, pages 192-204. Springer. [More] [Digital version] [Bibtex] [RIS]
  • Schütte, C., Dittmer, E. & Meerbach, E (2006). Multiscale Modelling in Molecular Dynamics: Biomolecular Conformations as Metastable States. In Ferrario, M., Ciccotti, G. & Binder, K. (editors), Computer Simulations in Condensed Matter: Systems: From Materials to Chemical Biology. Volume I, pages 475-497. Springer. [More] [Digital version] [Bibtex] [RIS]
  • Kornhuber, R. (2006). Robust Multigrid Methods for Vector-Valued Allen--Cahn Equations with Logarithmic Free Energy.. Computing and Visualization in Science, 9(2), 103-116. [More] [Bibtex] [RIS]
  • Sander, O. (2006). Automatic Construction of Boundary Parametrizations for geometric multigrid solvers. Computing and Visualization in Science, 9(1), 11-22. [More] [Bibtex] [RIS]
  • Vinet, A., Dubé, B., Richer, J. & Gulrajani, R. M. (2006). A Comparison of monodomain and bidomain {\hboxreaction-diffusion} models for action potential propagation in the human heart. IEEE Trans. Biomed. Eng., 53(12), 2425-2435. [More] [Bibtex] [RIS]
  • Gärtner, K. (2006). On fast factorization pivoting methods for symmetric indefinite systems. Electronic Transactions on Numerical Analysis, 23(1), 158-179. [More] [Bibtex] [RIS]
  • Bollhöfer, M. & Römer, R. A. (2006). On Large Scale Diagonalization Techniques For The Anderson Model Of Localization. SIAM J. Scientific Computing, 28(3), 963-983. [More] [Bibtex] [RIS]
  • Bollhöfer, M. (2006). Combinatorial Aspects in Sparse Direct Solvers. GAMM Mitteilungen, (29), 342-367. [More] [Bibtex] [RIS]
  • Hagemann, M. (2006). Weighted Matchings for Preconditioning Symmetric Indefinite Linear Systems. SIAM J. Scientific Computing, 28, 403-420. [More] [Bibtex] [RIS]
  • Röllin, S. (2006). Maximum-weighted matching strategies and the application to symmetric indefinite systems. Applied Parallel Computing. State of the Art in Scientific Computing, , 808-817. [More] [Bibtex] [RIS]

2005

  • Sander, O (2005). Fast solving of contact problems on complicated geometries. Domain Decomposition Methods in Science and Engineering. Berlin : Springer. [More] [Bibtex] [RIS]
  • Schütte, C. & Dittmer, E. (2005). Reduced stochastic models for complex molecular systems. Comp. Vis. Sci., 9(2), 89-102. [More] [Digital version] [Bibtex] [RIS]
  • Hartmann, C. (2005). Blind model reduction for high-dimensional time-dependent data. submitted to Physica D, . [More] [Bibtex] [RIS]
  • Schütte, C., Lorenz, S. & Huisinga, W. (2005). Adaptive Apporach for Non-Linear Sensitivity Analysis of Reaction Kinetics. J. Comp. Chem., 26(9), 941-948. [More] [Digital version] [Bibtex] [RIS]
  • Fackeldey, K (2005). Solving Frictional Contact Problems with Multigrid Efficiency. In Proc.of the 16th International Conference on Domain Decomposition Methods, pages 547-554. [More] [Bibtex] [RIS]
  • van der Vorst, H. (2005). Solution of Linear systems. Elsevier Science. [More] [Bibtex] [RIS]
  • Meuwly, M. & Banushkina, P. (2005). Efficiency considerations in solving smoluchowski equations for rough potentials. Computational Life Sciences, , 208-216. [More] [Bibtex] [RIS]

2004

  • Gerber & Susanne. (2004). Theoretische Untersuchung zur Wirkung von Inhibitoren in AbhŠngigkeit von ihrem Angriffsort im metabolischen Netzwerk und ihrem Typ. Master Thesis, Freie Universitr\"{Š}t Berlin, Kinetic Modelling Group, Max Planck Institute for Molecular Genetics Berlin. [More] [Digital version] [Bibtex] [RIS]
  • Schmidt, B., Schütte, C. & Weiser, M. (2004). Fully Adaptive Propagation of the Quantum-Classical Liouville Equation. J. Chem. Phys., 120(19), 8913-8923. [More] [Digital version] [Bibtex] [RIS]
  • Linnenbank, A. C., Grimbergen, C. A., de Bakker, J. M., van Dessel, P. F. & van Hemel, N. M. (2004). Properties of Unipolar Electrograms Recorded With a Multielectrode Basket Catheter. J.\ Electrocardiol., 37, 1-10. [More] [Bibtex] [RIS]
  • Dubé, B., Leon, L. J., Trudel, M.-C. & Gulrajani, R. M. (2004). Simulation of propagation in a membrane-based computer heart model with parallel processing. tbe, 51(8), 1319-1329. [More] [Bibtex] [RIS]
  • F"urlinger, K. & Hagemann, M (2004). Task-Queue Based Hybrid Parallelism: A Case Study. In Proceedings of the 10th International Euro-Par Conference on Parallel Processing (Euro-Par '04), pages 624-632. [More] [Digital version] [Bibtex] [RIS]
  • Gärtner, K. (2004). Solving Unsymmetric Sparse Systems of Linear Equations with PARDISO. Journal of Future Generation Computer Systems, 20(3), 475-487. [More] [Bibtex] [RIS]
  • Gupta, A. & Röllin, S. (2004). The Effects of Unsymmetric Matrix Permutations and Scalings in Semiconductor Device and Circuit Simulation. IEEE Transactions On Computer-Aided Design Of Integrated Circuits And Systems, 23(3), 400 - 411. [More] [Bibtex] [RIS]
  • Hillmann, M. (2004). Optimal design of metal forming die surfaces with evolution strategies. Computer and Structures, (82), 1695-1705. [More] [Bibtex] [RIS]

2003

  • Hagemann, M. & Röllin, S (2003). Recent advances in sparse linear solver technology for semiconductor device simulation matrices. In {{International Conference on Simulation of Semiconductor Processes and Devices (SISPAD)}, pages={103--108}, year={2003}, organization={{IEEE}}}% --- Year 2002 ---------------------------------- -------------------- %. [More] [Bibtex] [RIS]
  • Weiser, M. (2003). Adaptive Integration of Molecular Dynamics. J. Comp. Chem., 24(15), 1921-1929. [More] [Digital version] [Bibtex] [RIS]
  • Wohlmuth, B. (2003). Monotone Methods on Nonmatching Grids for Nonlinear Contact Problems. SIAM J. Sci. Comput., 25(1), 324-347. [More] [Bibtex] [RIS]
  • Kornhuber, R (2003). On Multigrid Methods for Vector-Valued Allen-Cahn equations. In Proceedings of the fourteenth international conference on domain decomposition methods. [More] [Bibtex] [RIS]

2002

  • Schmidt, B. & Schütte, C. (2002). Multidimensional Classical Liouville Dynamics with Quantum Initial Conditions. J. Chem. Phys., 117(10), 4643-4650. [More] [Digital version] [Bibtex] [RIS]
  • Schmidt, B., Salzmann, C. & Schütte, C. (2002). Quantum-Classical Liouville Approach to Molecular Dynamics: Surface Hopping Gaussian Phase-Space Packets. J. Chem. Phys., 117(24), 11075-11088. [More] [Digital version] [Bibtex] [RIS]
  • Wolmuth, B. (2002). A Dirichlet-Neumann Type Algorithm for Contact Problems with Friction. Computing and Visualization in Science, 5(3), 139-148. [More] [Bibtex] [RIS]
  • Linnenbank, A. C. & Grimbergen, C. A. (2002). Software Design for Analysis of Multichannel Intracardial and Body Surface Electrocardiograms. Comp.\ Meth.\ Progr.\ Biomed., 69, 225-236. [More] [Bibtex] [RIS]
  • Linnenbank, A. C., Sippensg{}, A., Grimbergen, C. A., de Bakker, J. M., Strackee, J., Potse, M. et al. (2002). Conversion of left ventricular endocardial positions from patient-independent co-ordinates into biplane fluoroscopic projections. mbec, 40(1), 41-46. [More] [Bibtex] [RIS]
  • Linnenbank, A. C., de Bakker, J. M., Shah, D., Hocini, M., Ha{"{i}}ssaguerre, M., Janse, M. J. et al. (2002). Electrical Conduction in Canine Pulmonary Veins: Electrophysiological and Anatomic Correlation. Circulation, 105, 2442-2448. [More] [Bibtex] [RIS]
  • Gärtner, K. (2002). Two-Level Scheduling in PARDISO: Improved Scalabilty on Shared Memory Multiprocessing Systems. Parallel Computing, 28(1), 400-41. [More] [Bibtex] [RIS]

2001

  • Krause & Rolf. (2001). Monotone Multigrid Methods for Signorini's Problem with Friction. Phd Thesis, FU Berlin. [More] [Bibtex] [RIS]
  • Schmidt, B. & Schütte, C. (2001). A Theoretical Model for Molecules Interacting with Intense Laser Pulses: The Floquet-based Quantum-Classical Liouville Equation. J. Chem . Phys., 115(13), 5733-5743. [More] [Digital version] [Bibtex] [RIS]
  • Wohlmuth, B. (2001). A Multigrid Method Based on the Unconstrained Product Space arising from Mortar Finite Element Discretizations. SIAM J. Numer. Anal., 39(1), 192-213. [More] [Bibtex] [RIS]
  • Kornhuber, R. (2001). Adaptive Multigrid Methods for Signorini's Problem in Linear Elasticity. Comp. Visual. Sci., 4, 9-20. [More] [Bibtex] [RIS]
  • Wohlmuth, B. (2001). Domain Decomposition Methods on Nonmatching Grids and Some Applications to Linear Elasticity Problems. Z. Angew. Math. Mech., 81(1), 21-24. [More] [Bibtex] [RIS]
  • de Bakker, J. M., Wilms-Schopman, F. J., Jongsma, H. J., Willecke, K., Krueger, O., van Kempen, M. J. et al. (2001). Impaired conduction in the bundle branches of mouse hearts lacking the gap junction protein Connexin40. Circulation, 103, 1591-1598. [More] [Bibtex] [RIS]
  • Linnenbank, A. C., Sippensg{}, A., de Bakker, J. M., Jessurun, E. R., Wever, E. F., van Dessel, P. F. et al. (2001). Relation Between Body Surface Mapping and Endocardial Spread of Ventricular Activation in Postinfarction Heart. jce, 12, 1232-1241. [More] [Bibtex] [RIS]
  • Stricker, A., Gärtner, K. & Fichtner, W. (2001). PARDISO: a high-performance serial and parallel sparse linear solver in semiconductor device simulation. Future Generation Computer Systems, 18(1), 69-78. [More] [Bibtex] [RIS]

2000

  • Linnenbank, A. C., Sippensg{}, A., Grimbergen, C. A. & Peeters, H. A. (2000). Continuous Localization of Cardiac Activation Sites Using a Database of Multichannel ECG Recordings. tbe, 47(5), 682-689. [More] [Bibtex] [RIS]
  • Wohlmuth, B. I. & Krause, R. H. (2000). Nonconforming Domain Decomposition Methods Techniques for Linear Elasticity. East--West Journal of Numerical Mathematics, 8(3), 177-206. [More] [Bibtex] [RIS]
  • Wolmuth, B. (2000). Multigrid Methods for Mortar Finite Elements. E. Dick, K. Riemslagh, J. Vierendeels (Eds.) Multigrid Methods VI, Lecture Notes in Computational Science and Engeneering Springer, Berlin-Heidelberg-New York, 14, 136-142. [More] [Bibtex] [RIS]
  • Gärtner, K. & Fichtner, W. (2000). Efficient sparse LU factorization with left-right looking strategy on shared memory multiprocessors. BIT, 40(1), 158-176. [More] [Bibtex] [RIS]

1999

  • Linnenbank, A. C., Sippensg{}, A., Grimbergen, C. A., Wever, E. F., Peeters, H. A., Ramanna, H. et al. (1999). Clinical Application of an Integrated 3-Phase Mapping Technique for Localization of the Site of Origin of Idiopathic Ventricular Tachycardia. Circulation, 99, 1300-1311. [More] [Bibtex] [RIS]

1998

  • Sippensg{}, A., Grimbergen, C. A., Wever, E. F., Peeters, H. A., Daniëls, M. C., Hauer, R. N. et al. (1998). Electrocardiographic Identification of Abnormal Ventricular Depolarization and Repolarization in Patients with Idiopathic Ventricular Fibrillation. jacc, 31(6), 1406-1413. [More] [Bibtex] [RIS]
  • Bornemann, F. A (1998). Classical and Cascadic Multigrid - A Methodological Comparison. In Proc. 9th Int'l. Conference on Domain Decomposition Methods 1996, Ullensvang, Norway, pages 64-71. [More] [Bibtex] [RIS]

1996

  • Krause, R. (1996). Über die Konvergenz des kaskadischen Mehrgitterverfahrens. Freie Universität Berlin, Fachbereich Mathematik und Informa. [More] [Bibtex] [RIS]

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