Publications

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2014

  • Maffessanti, F (2014). How to interpret statistics?. In EuroEcho Imaging. [More] [Bibtex] [RIS]
  • Krause, R., Dickopf, T. & Zulian, P (2014). Stable mesh transfer for parallel multi-physics simulations. In WCCM XI, ECCM V, ECFD VI. [More] [Bibtex] [RIS]
  • Favino, M (2014). Efficient Numerical Simulation of Periodontal Ligament. In 5th European conference on Computational Mechanics, Barcelona. [More] [Bibtex] [RIS]

2013

  • Rollmann, G., Gottschalk, H., Krause, R. & Schmitz, S (2013). A PROBABILSTIC APPROACH TO LOW-CYCLE FATIGUE. In Proceedings of ASME Turbo Expo 2013. [More] [Bibtex] [RIS]
  • Favino, M., Gross, C., Drolshagen, M., Keilig, L., Deschner, J., Bourauel, C. et al. (2013). Validation of a heterogeneous elastic-biphasic model for the numerical simulation of the PDL. International Journal for Computational Methods in Engineering Science and Mechanics, 16(5), 544-553. [More] [Bibtex] [RIS]
  • Terence J. O'Kane, M. A (2013). Low frequency variability in an coupled ocean-sea ice generalcirculation model of the Southern Ocean. In McCue, S., Moroney, T., Mallet, D. & Bunder, J. (editors), Proceedings of the 16th Biennial Computational Techniques andApplications Conference, CTAC-2012, pages C200-C216. [More] [Digital version] [Bibtex] [RIS]
  • Groß, C., Krause, R. & Poletti, V (2013). A Numerical Remark on the Time Discretization of Contact Problems in Nonlinear Elasticity. In Cangiani, Andrea, Davidchack, L., R., Georgoulis, Emmanuil et al (editors), Numerical Mathematics and Advanced Applications 2011. Springer Berlin Heidelberg. [More] [Digital version] [Bibtex] [RIS]
  • Kaiser, Olga, Horenko & Illia. (2013). On inference of statistical regression models for extreme events based on incomplete observation data. submitted to Communications in Applied Mathematics and Computational Science, . [More] [Digital version] [Bibtex] [RIS]
  • H., G., G., R. & S., S (2013). A probabilistc approach to low-cycle fatigue. In ASME Turbo Expo 2013. [More] [Bibtex] [RIS]
  • Schädle, A. & Schmidt, F. (2013). Transparent boundary conditions based on the Pole Condition for time-dependent, two-dimensional problems. Numerical Methods for Partial Differential Equations, 29(4), 1367-1390. [More] [Digital version] [Bibtex] [RIS]
  • T. J. O'Kean, M. C. (2013). Intrinsic and Forced Modes of Low Frequency Variability in Simulated Southern Ocean - Sea Ice Dynamics. to appear in Ocean Modelling, . [More] [Bibtex] [RIS]
  • Majda, A. & de Wiljes, J. (2013). An adaptive Markov chain Monte Carlo approach to time series clustering of processes with regime transition behavior. accepted for publication at SIAM Mult. Mod. Sim., . [More] [Bibtex] [RIS]
  • Grillo, R. K. (2013). A Stability Condition for the Numerical Simulation of Poroelastic Systems. [More] [Bibtex] [RIS]
  • Favino, M (2013). A stability condition for the numerical simulation of poroelastic systems. In 5th Biot Conferences on Poromechanics, Vienna. [More] [Bibtex] [RIS]
  • Favino, M (2013). Validation of a Poroelastic Model for the Numerical Simulation of Periodontal Ligament. In 11th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering, Salt Lake City. [More] [Bibtex] [RIS]
  • Dickopf, K. (2013). Analysis of a Lightweight Parallel Adaptive Scheme for the Solution of the Monodomain Equation, Institute of Computational Science, University of Lugano. [More] [Bibtex] [RIS]

2012

  • Veeser, A. (2012). An efficient and reliable residual-type a posteriori error estimator for the Signorini problem, Institute of Computational Science. [More] [Bibtex] [RIS]
  • Krause, Rolf, Walloth & Mirjam. (2012). Presentation and Comparison of Selected Algorithms for Dynamic Contact Based on the Newmark Scheme. Applied Numerical Mathematics, 62(10), 1393-1410. [More] [Bibtex] [RIS]
  • Meroni, A., Cantone, A., Ogushi, F., Filippi, M. D., Pasquali, P. & Vitulli, R (2012). Performance analysis of GPU-based SAR and Interferometric SAR image processing. In Proc. of the 4th Asia-Pacific Conference on Synthetic Aperture Radar (APSAR). [More] [Bibtex] [RIS]
  • Dickopf & Thomas. (2012). A note on the W$^1,p$-stability of piecewise linear interpolation, Institute of Computational Science, University of Lugano. [More] [Bibtex] [RIS]
  • Dickopf, Thomas, Krause & Rolf. (2012). Numerical study of the almost nested case in a multilevel method based on non-nested meshes, Institute of Computational Science, University of Lugano. [More] [Bibtex] [RIS]
  • H"ubner, H., Arnold, L., Winkel, M. & Gibbon, P. (2012). A massively parallel, multi-disciplinary Barnes-Hut tree code for extreme-scale N-body simulations. Computer Physics Communications, 183(4), 880-889. [More] [Digital version] [Bibtex] [RIS]
  • Dickopf, Thomas, Krause & Rolf. (2012). Evaluating local approximations of the L$^2$-orthogonal projection between non-nested finite element spaces, Institute of Computational Science, University of Lugano. [More] [Bibtex] [RIS]
  • () (2012). Hybrid Space-Time Parallel Solution of Burgers' Equation. In Proceedings of the 21st International Conference on Domain Decomposition Methods. [More] [Digital version] [Bibtex] [RIS]
  • Ruprecht, D., Emmett, M., Minion, M., Winkel, M., Gibbon., P., Krause, R. et al (2012). Integrating an N-body problem with SDC and PFASST.. In Proceedings of the 21st International Conference on Domain Decomposition Methods. [More] [Digital version] [Bibtex] [RIS]
  • Favino, Marco, Krause, Rolf, Steiner & Johannes (2012). Heterogeneous Coupling: A Comparison of two Approaches for the Modeling of thin Structures. In Proceedings of the Ninth IASTED International Conference on Biomedical Engineering (BioMed 2012). [More] [Bibtex] [RIS]
  • Auricchio, A., Krause, D., Prinzen, F. W., Bacharova, L. & Potse, M. (2012). Similarities and differences between ECG signs of left bundle branch block and left-ventricular uncoupling. Europace, 14(suppl. 5), v33-v39. [More] [Digital version] [Bibtex] [RIS]
  • de Wiljes, J. (2012). Discrete non-homogenous and non-stationary logistic and Markov regression models for spatio-temporal data with unresolved external influences. submitted to CAMCoS, . [More] [Bibtex] [RIS]
  • O'Kean, T. J., Risbey, J. S., Franzke, C., Horenko, Illia & Monselesan, D. (2012). Changes in the meta-stability of the mid-latitude Southern Hemisphere circulation and the utility of non- stationary cluster analysis and split flow blocking indices as diagnostic tools. in press at J. Atmos. Sci., . [More] [Digital version] [Bibtex] [RIS]
  • Ruprecht, Daniel, Krause & Rolf. (2012). Explicit Parallel-in-time Integration of a Linear Acoustic-Advection System. Computers & Fluids, 59, 72-83. [More] [Digital version] [Bibtex] [RIS]
  • Gibbon, P (2012). Parallel remeshing in tree codes for vortex particle methods. In International Conference on Parallel Computing. [More] [Bibtex] [RIS]
  • Dickopf, T., Krause & Rolf. (2012). A contact method for parametric finite elements, Institute of Computational Science, USI. [More] [Bibtex] [RIS]
  • Favino, Marco, Krause, Rolf, Steiner & Johannes (2012). An Efficient Preconditioning Strategy for Schur Complements Arising from Biphasic Models. In Biomedical Engineering / 765: Telehealth / 766: Assistive Technologies. [More] [Bibtex] [RIS]
  • Potse & Mark. (2012). Mathematical modeling and simulation of ventricular activation sequences: implications for cardiac resynchronization therapy. J. Cardiovasc. Transl. Res., 5, 146-158. [More] [Bibtex] [RIS]
  • Wächter, A., Curtis, F. & Huber, J. (2012). A Note on the Implementation of an Interior-Point Algorithm for Nonlinear Optimization with Inexact Step Computations. Mathematical Programming, Series~B, 32(6), 3447-3475. [More] [Bibtex] [RIS]
  • Gärtner, K (2012). Parallel Numerical Linear Algebra. Encyclopedia of Parallel Computing. Springer. [More] [Bibtex] [RIS]
  • Gerber & Susanne. (2012). Computational investigation of cation induced stress in yeast: Strategies for understanding the complex system of cation homeostasis in the yeast Saccharomyces cerevisia. SŸdwestdeutscher Verlag fŸr Hochschulschriften. [More] [Digital version] [Bibtex] [RIS]
  • Schütte, C., Marquet, R. & von Kleist, M. (2012). Polymerase inhibition by nucleoside analogs: Cellular- and kinetic parameters of efficacy, susceptibility and resistance selection. PLoS Comput. Biol., 8(1), e1002359. [More] [Digital version] [Bibtex] [RIS]
  • Majda, A. J. & Giannakis, D. (2012). Information theory, model error, and predictive skill of stochastic models for complex nonlinear systems. Physica D: Nonlinear Phenomena, 241(20), 1735-1752. [More] [Digital version] [Bibtex] [RIS]
  • Blume, C. & Mathes, K. (2012). Supervised Learing Approaches to Classify Stratospheric Warming Events. J. Atm. Sci., 69, 1824-1840. [More] [Bibtex] [RIS]
  • Metzner, Philipp, Putzig, Lars, Horenko & Illia. (2012). Analysis of persistent non-stationary time series and applications. CAMCoS, 7(2), 175-229. [More] [Digital version] [Bibtex] [RIS]
  • Favino, M (2012). Numerical validation of a non-linear biphasic model for the periodontal ligament. In 4th workshop of the clinical research unit 208 DFG, Bonn. [More] [Bibtex] [RIS]
  • Favino, M (2012). An Efficient Preconditioning Strategy for Schur Complements Arising from Biphasic Models. In The Ninth IASTED International Conference onBiomedical Engineering, Innsbruck. [More] [Bibtex] [RIS]
  • Favino, M (2012). A Non-linear Biphasic Model for the Periodontal Ligament: Modeling and Simulation. In 8th European Solid Mechanics Conference, Graz. [More] [Bibtex] [RIS]
  • Grillo, A., Giverso, C., Favino, M., Krause, R., Lampe, M. & Wittum, G (2012). Numerical Analysis of Heat and Mass Transfer in Porous Media. Advanced Structured Materials, chapter Mass Trans. Springer, Berlin, Heidelberg. [More] [Bibtex] [RIS]
  • Gibbon, P (2012). Parallel remeshing in tree codes for vortex particle methods. In Bosschere, K. D., D'Hollander, E. H., Joubert, G. R., Padua, D., Peters, F. & Sawyer, M. (editors), Applications, Tools and Techniques on the Road to Exascale Computing. Gent, Belgium. [More] [Bibtex] [RIS]
  • Ruprecht, D. & Krause, R. (2012). Hybrid Space-Time Parallel Solution of Burger’s Equation, Institute of Computational Science (USI). [More] [Bibtex] [RIS]
  • Ruprecht, D., Croce, R. & Krause, R. (2012). Parallel-in-Space-and-Time Simulation of the Three-Dimensional, Unsteady Navier-Stokes Equations for Incompressible Flow, Institute of Computational Science, University of Lugano. [More] [Bibtex] [RIS]
  • Ruprecht, D. & Krause, R. (2012). Explicit Parallel-in-time Integration of a Linear Acoustic-Advection System. Computers & Fluids, 59, 72-83. [More] [Bibtex] [RIS]
  • Grillo, A., Giverso, C., Wittum, G. & Lampe, M (2012). Mass Transport in Porous Media With Variable Mass. In Delgado, Q., J. M., Lima, Barbosa, A. G., Silva & Vázquez, M. (editors), Numerical Analysis of Heat and Mass Transfer in Porous Media. Springer Berlin Heidelberg. [More] [Digital version] [Bibtex] [RIS]
  • Veeser, A. (2012). Efficient and reliable residual-type a posteriori error estimator for the Signorini problem, Institute of Computational Science, University of Lugano. [More] [Bibtex] [RIS]
  • Winkel, M., Emmet, M., Minion, M. & Gibbon, P (2012). A massively space-time parallel N-body solver. In Proceedings of the Supercomputing Conference 2012, Salt Lake City. Salt Lake City, USA. [More] [Bibtex] [RIS]
  • Krause, R. & Dickopf, T (2012). Numerical Study of the Almost Nested Case in a Multilevel Method Based on Non-nested Meshes. In. [More] [Bibtex] [RIS]
  • Auricchio, A., Prinzen, F. W. & Bacharova, L. (2012). Similarities and differences between electrocardiogram signs of left bundle-branch block and left-ventricular uncoupling. Europace, 14(suppl 5), v33-v39. [More] [Digital version] [Bibtex] [RIS]
  • Croce, Roberto, Ruprecht, Daniel, Krause & Rolf. (2012). Parallel-in-Space-and-Time Simulation of the Three-Dimensional, Unsteady Navier-Stokes Equations for Incompressible Flow, ICS. [More] [Digital version] [Bibtex] [RIS]
  • Bourauel, C. & Drolshagen, M (2012). A NON-LINEAR BIPHASIC MODEL FOR THE PERIODONTAL LIGAMENT: MODELLING AND SIMULATION. In Proceedings of CMBBE2012. [More] [Bibtex] [RIS]
  • Auricchio, A. & Prinzen, F (2012). Hybrid Parallelization of a Large-Scale Heart Model. In Keller, Rainer, Kramer, David, Weiss & Jan-Philipp (editors), Facing the Multicore - Challenge II. Springer Berlin Heidelberg. [More] [Digital version] [Bibtex] [RIS]
  • Hoogendijk, M. G. & Coronel, R. (2012). Early repolarization patterns: The good, the bad and the ugly?. Heart Rhythm, 9, 225-229. [More] [Bibtex] [RIS]
  • Christen, M. (2012). A Performance Study of an Anelastic Wave Propagation Code Using Auto-tuned Stencil Computations. Procedia Computer Science, 5, 1466-1474. [More] [Bibtex] [RIS]
  • Sameh, A., Uçar, B. & Sathe, M (2012). Towards A Scalable Hybrid Linear Solver Based On Combinatorial Algorithms. In ~Naumann, U. & ~Schenk, O. (editors), Combinatorial Scientific Computing. Taylor & Francis. [More] [Bibtex] [RIS]
  • Wächter, A., Varnik, E., Huber, J. & Naumann, U (2012). Algorithmic Differentiation and Nonlinear Optimization for an Inverse Medium Problem. In ~Naumann, U. & ~Schenk, O. (editors), Combinatorial Scientific Computing. Taylor & Francis. [More] [Bibtex] [RIS]
  • Bronstein, A. M., Stecha, C. & Fua, P. (2012). LDAHash: improved matching with smaller descriptors. IEEE Trans. Pattern Analysis and Machine Intelligence (PAMI), 34(1), 66-78. [More] [Bibtex] [RIS]

2011

  • Dickopf & Thomas. (2011). Nodal interpolation between first-order finite element spaces in 1D is uniformly H$^1$-stable, Institute of Computational Science, University of Lugano. [More] [Bibtex] [RIS]
  • Drolshagen, M., Keilig, L., Hasan, I., Reimann, S., Deschner, J., Brinkmann, K. T. et al. (2011). Development of a novel intraoral measurement device to determine the biomechanical characteristics of the human periodontal ligament. Journal of Biomechanics, 44(11), 2136-2143. [More] [Bibtex] [RIS]
  • Bourauel, C., Hasan, I., Deschner, J., Brinkmann, K. T., Keilig, L., Drolshagen, M. et al. (2011). Development of a novel intraoral measurement device to determine the biomechanical characteristics of the human periodontal ligament. Journal of Biomechanics, 44(11). [More] [Bibtex] [RIS]
  • Dickopf, Thomas, Krause & Rolf. (2011). Monotone multigrid methods based on parametric finite elements, Institute of Computational Science, University of Lugano. [More] [Bibtex] [RIS]
  • Gross, C (2011). A Numerical Remark on the Time Discretization of Contact Problems in Nonlinear Elasticity. In Numerical Mathematics and Advanced Applications, pages 165-173. Springer. [More] [Digital version] [Bibtex] [RIS]
  • Bourauel, C., Gross, C., Deschner, J., Keilig, L. & Drolshagen, M. (2011). Validation of a heterogeneous elastic-biphasic model for the numerical simulation of the PDL. Computer Methods in Biomechanics and Biomedical Engineering, . [More] [Digital version] [Bibtex] [RIS]
  • Groß, C., Steiner, J., Conen, L., Favino, M., Dickopf, T. & Poletti, V. (2011). ObsLib++. [More] [Bibtex] [RIS]
  • Krause, Rolf, Walloth & Mirjam. (2011). A family of space-time connecting discretization schemes for elastodynamic contact problems with local impact detection. Computer Methods in Applied Mechanics and Engineering, 200, 3425-3438. [More] [Bibtex] [RIS]
  • Krause, Dorian & Rolf (2011). Parallel Scale-Transfer in Multiscale MD-FE Coupling Using Remote Memory Access. In e-Science Workshops, pages 66-73. [More] [Bibtex] [RIS]
  • Dickopf, Thomas, Krause & Rolf (2011). A study of prolongation operators between non-nested meshes. In ~Huang, Y., ~Kornhuber, R., ~Widlund, O. & ~Xu, J. (editors), Domain Decomposition Methods in Science and Engineering XIX. Berlin : Springer. [More] [Digital version] [Bibtex] [RIS]
  • Klipp, E., Fröhlich, M. & Stoma, S. (2011). STSE: Spatio-Temporal Simulation Environment Dedicated to Biology. BMC Bioinformatics, 12(126). [More] [Digital version] [Bibtex] [RIS]
  • Gerber & Susanne. (2011). In silico modeling of cation homeostasis in Saccaromyces cerevisiae. Phd Thesis. [More] [Digital version] [Bibtex] [RIS]
  • Hartmann, C., Schütte, C. & Latorre, J. C. (2011). A Structure-preserving numerical discretization of reversible diffusions. Commun. Math. Sci., 9(4), 1051-1072. [More] [Digital version] [Bibtex] [RIS]
  • Horenko & Illia. (2011). On analysis of nonstationary categorical data time series: dynamical dimension reduction, model selection and applications to computational sociology. Multi. Mod. Sim., 9(4), 1700-1726. [More] [Bibtex] [RIS]
  • Horenko & Illia. (2011). Nonstationarity in multifactor models of discrete jump processes, memory and application to cloud modeling. J. Atmos. Sci., 68(7), 1493-1506. [More] [Bibtex] [RIS]
  • Egbers, C., Alexandrov, K. & Harlander, U. (2011). Nicht-stationäre Analyse des baroklynen Wellentanktankexperiments mittels FEM-BV-VARX, USI. [More] [Bibtex] [RIS]
  • Bronstein, A. M., Raviv, D., Sochen, N. & Kimmel, R. (2011). Affine-invariant geodesic geometry of deformable 3D shapes. Computers and Graphics, 35(3). [More] [Bibtex] [RIS]
  • Bronstein & Michael. (2011). Lazy sliding window implementation of the bilateral filter on parallel architectures. IEEE Trans. Image Processing (TIP), 20(6), 1-5. [More] [Bibtex] [RIS]
  • Bronstein, A. M., Raviv, D., Sochen, N. & Kimmel, R (2011). Affine-invariant diffusion geometry for the analysis of deformable 3D shapes. In Proc. Computer Vision and Pattern Recognition (CVPR). [More] [Digital version] [Bibtex] [RIS]
  • Bronstein, A. M. & Pokrass, J (2011). A correspondence-less approach to matching of deformable shapes. In Proc. Conf. on Scale Space and Variational Methods in Computer Vision (SSVM). [More] [Bibtex] [RIS]
  • Bronstein, A. M. & Pokrass, J. (2011). A correspondence-less approach to matching of deformable shapes. [More] [Bibtex] [RIS]
  • Auricchio, A., Mateasnik, A., Prinzen, F., Bacharova, L., Potse, M. & Krause, R. (2011). The effect of reduced intercellular coupling on electrocardiographic signs of left ventricular hypertrophy. Journal of Electrocardiology, 44(5), 571-576. [More] [Bibtex] [RIS]
  • Lenzen, C. & Fackeldey, K. (2011). Coupling Molecular Dynamics and Continua with Weak Constraints. SIAM Journal on Multiscale Modeling & Simulation, 9(4), 1459-1494. [More] [Digital version] [Bibtex] [RIS]
  • Jäger, A., Bourauel, C., Papadopoulou, K., Keilig, L. & Eliades, T. (2011). The time-dependent biomechanical behaviour of the periodontal ligament—an in vitro experimental study in minipig mandibular two-rooted premolars. European Journal of Orthodontics, . [More] [Bibtex] [RIS]
  • Badea, L. (2011). One- and two-level multiplicative Schwarz methods for variational and quasi-variational inequalities of the second kind. Numerische Mathematik, . [More] [Bibtex] [RIS]
  • Dickopf, T. (2011). Quantitative studies of transfer operators between non-nested finite element spaces, Institute of Computational Science, USI. [More] [Bibtex] [RIS]
  • Groß, C. (2011). On the Globalization of ASPIN employing Trust-Region Control Strategies - Convergence Analysis and Numerical Examples, Instuitute of Computational Science, USI. [More] [Bibtex] [RIS]
  • Auricchio, A., Prinzen, F., Potse, M. & Dickopf, T. (2011). Hybrid Parallelization of a Realistic Heart Model. ICS-preprint, (2011-04). [More] [Bibtex] [RIS]
  • Groß, C., Bourauel, C., Deschner, J., Keilig, L. & Drolshagen, M. (2011). Validation of a heterogeneous elastic-biphasic model for the numerical simulation of the PDL. Computer Methods in Biomechanics and Biomedical Engineering, . [More] [Bibtex] [RIS]
  • Fackeldey, K (2011). Numerical validation of a constraints-based multiscale simulation method for solids. In Meshfree Methods for Partial Differential Equations V, pages 141-154. [More] [Bibtex] [RIS]
  • Bourauel, C., Hasan, I., Deschner, J., Brinkmann, K. T., Keilig, L., Drolshagen, M. et al. (2011). Development of a novel intraoral measurement device to determine the biomechanical characteristics of the human periodontal ligament.. J Biomech, 44(11), 2136-43. [More] [Bibtex] [RIS]
  • Lenzen, C. & Fackeldey, K. (2011). Coupling Molecular Dynamics and Continua with Weak Constraints. Multiscale Modeling & Simulation, 9(4), 1459-1494. [More] [Digital version] [Bibtex] [RIS]
  • IEEE 7th International Conference on E-Science, e-Science 2011, Workshop Proceedings, Stockholm, Sweden, December 5-8, 2011. (2011), IEEE Computer Society. [More] [Bibtex] [RIS]
  • Auricchio, A. & Prinzen, W. F (2011). Poster: hybrid parallelization of a realistic heart model. In SC Companion, pages 13-14. [More] [Bibtex] [RIS]
  • Krause, D., Lathrop, S., Costa, J. & Kramer, W., editors. (2011). Conference on High Performance Computing Networking, Storage and Analysis - Companion Volume, SC 2011, Seattle, WA, USA, November 12-18, 2011, ACM. [More] [Bibtex] [RIS]
  • Prinzen, F. W., Kuijpers, N. H., Verheule, S., ten Eikelder, H. M., Schotten, U. & van Dam, P. M. (2011). Mechano-Electrical Coupling Influences Onset and Perpetuation of Atrial Fibrillation during Acute Atrial Dilatation. Heart Rhythm, 8, 429-436. [More] [Bibtex] [RIS]
  • Auricchio, A., Mateasik, A., Prinzen, F. W. & Bacharova, L. (2011). The effect of reduced intercellular coupling on electrocardiographic signs of left ventricular hypertrophy. J. Electrocardiol., 44, 571-576. [More] [Bibtex] [RIS]
  • Vinet, A., de Bakker, J. M., Hoogendijk, M. G. & Coronel, R. (2011). ST-Segment Elevation by Current-to-Load Mismatch: An Experimental and Computational Study. Heart Rhythm, 8, 111-118. [More] [Bibtex] [RIS]
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