Publications

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2017

  • Nguyen, U. C., Maffessanti, F., Zeemering, S., Conte, G., Mafi-rad, M., Caputo, M. L. et al (2017). Head--to--head comparison of endocardial and epicardial voltage amplitudes with scar on delayed enhancement cardiac magnetic resonance imaging in heart failure patients. In HRS. Chicago, IL. [More] [Bibtex] [RIS]
  • Nguyen, U. C., Maffessanti, F., Zeemering, S., Conte, G., Mafi-rad, M., Regoli, F. et al (2017). Endocardial and epicardial voltage amplitude measurements for myocardial scar detection: validation by delayed enhancement CMR in heart failure patients. In EHRA EUROPACE CARDIOSTIM. Wien, Austria. [More] [Bibtex] [RIS]
  • Zulian, P., Nestola, M. & Krause, R (2017). Fictitious Domain Method for 3D FSI Simulations of Turbines. In SCCER - FURIES Annual Conference. [More] [Bibtex] [RIS]
  • Kopanicakova, A. & Krause, R (2017). A non-linear multilevel method for phase-field fracture models. In PASC. Lugano. [More] [Bibtex] [RIS]
  • Krause, R. & Quaglino, A. (2017). 6th Workshop on Parallel-in-Time methods.. [More] [Bibtex] [RIS]
  • Favino, M (2017). Numerical simulation of wave-induced fluid flow in porous media. In Poroelasticity mini-symposium, Lausanne. [More] [Bibtex] [RIS]
  • Favino, M (2017). Multigrid Methods for Variational Space-Time Elements. In 6th Workshop on Parallel in Time Methods. [More] [Bibtex] [RIS]
  • Favino, M (2017). Efficient solution strategies for electromechanics in the heart. In Visualization and uncertainty in patient-specific whole-heart modeling, Berlin. [More] [Bibtex] [RIS]
  • Favino, M (2017). Efficient numerical methods in cardiac mechanics. In Reliable Methods of Mathematical Modeling 8, Berlin. [More] [Bibtex] [RIS]
  • Favino, M (2017). Efficient Finite Element Simulations for Fracture Networks. In SCCER-SoE Annual Conference, Zurich. [More] [Bibtex] [RIS]
  • Favino, M (2017). An optimal stabilization of the discrete poroelasticity system and its role on the convergence of multigrid solvers. In 12th International Workshop on Variational Multiscale and Stabilized Finite Elements VMS, Sevilla. [More] [Bibtex] [RIS]
  • Favino, M (2017). An accuracy condition for the finite element discretization of Biot's equations on triangular meshes. In 6th Biot Conferences on Poromechanics, Paris. [More] [Bibtex] [RIS]
  • Hunziker, J., Favino, M., Caspari, E., Quintal, B., Rubino, J. G., Krause, R. et al. (2017). Seismic Attenuation in Realistic Fracture Networks. [More] [Bibtex] [RIS]
  • Kopanicakova. (2017). Internship at Disney Animation Studios.. [More] [Bibtex] [RIS]
  • Ambrosi, D., Pezzuto, S., Riccobelli, D., Stylianopoulos, T. & Ciarletta, P. (2017). Solid Tumors Are Poroelastic Solids with a Chemo-mechanical Feedback on Growth. Journal of Elasticity, 129(1-2), 107-124. [More] [Bibtex] [RIS]
  • Benedusi, P., Hupp, D., Arbenz, P. & Krause, R (2017). Parallel space--time multigrid for the time--periodic Navier--Stokes equations. In. Svalbard, Norway. [More] [Bibtex] [RIS]
  • Benedusi, P., Li, X. & Krause, R (2017). An iterative approach for time-parallel time integration based on discontinuous Galerkin methods. In. [More] [Bibtex] [RIS]
  • Benedusi, P., Li, X. & Krause, R (2017). A Multilevel Iterative Approach Based on Discontinuous Galerkin Methods with Space-Time Coarsening. In. Sozopol, Bulgaria. [More] [Bibtex] [RIS]
  • Benedusi, P., Zulian, P., Garoni, C. & Krause, R. (2017). Time Parallel and Space--Time Approaches in Electrophysiology. [More] [Bibtex] [RIS]
  • Bilgen, C., Kopani\vcáková, A., Krause, R. & Weinberg, K (2017). Large-scale simulation of pneumatic and hydraulic fracture with a phase-field approach. In. ECCOMAS, Bad Honnef, Germany. [More] [Bibtex] [RIS]
  • Bilgen, C., Kopani\vcáková, A., Krause, R. & Weinberg, K. (2017). A phase-field approach to pneumatic fracture. [More] [Bibtex] [RIS]
  • Byshkin, M., Stivala, A., Mira, A., Robins, G. & Lomi, A (2017). Efficient Markov chain Monte Carlo estimation of exponential-family random graph models. In International Conference on Monte Carlo Methods and Applications. Montreal, Canada. [More] [Bibtex] [RIS]

2016

  • Vizzardi, E., Maffessanti, F., Lorusso, R., Sciatti, E., Bonadei, I., Gelsomino, S. et al. (2016). Ascending Aortic dimensions in hypertensive subjects: reference values for two-dimensional echocardiography. Journal of the American Society of Echocardiography, 29(9), 827-837. [More] [Bibtex] [RIS]
  • Nestola, M. G., Barna, B., Zolfaghari, H., Obrist, D. & Krause, R (2016). FDM-FEM coupling for Fluid Structure Interaction Simulations in Soft Tissues. In VPH 2016 - Virtual Physiological Human Conference. Amsterdam. [More] [Bibtex] [RIS]
  • Potse, S. V. & Schotten, U. (2016). Epicardial fibrosis explains increased transmural conduction in a computer model of atrial fibrillation. [More] [Bibtex] [RIS]
  • Gharaviri, A., Potse, M., Verheule, S., Krause, R., Auricchio, A. & Schotten, U (2016). Epicardial fibrosis explains increased transmural conduction in a computer model of atrial fibrillation. In Computing in Cardiology. Vancouver. [More] [Bibtex] [RIS]
  • Keilig, L., Drolshagen, M., Tran, K. L., Hasan, I., Reimann, S., Deschner, J. et al. (2016). In vivo measurements and numerical analysis of the biomechanical characteristics of the human periodontal ligament. Annals of Anatomy - Anatomischer Anzeiger, 206, 80-88. [More] [Bibtex] [RIS]
  • Pezzuto, S., Kalavsky, P., Potse, M., Prinzen, F. W., Auricchio, A. & Krause, R. (2016). Rapid Estimation of 3D Ventricular Activation in Heart Failure Patients from Electroanatomic Mapping.. [More] [Bibtex] [RIS]
  • Pezzuto, S., Kalavsky, P., Potse, M., Prinzen, F. W., Auricchio, A. & Krause, R. (2016). Accurate Estimation of 3D Ventricular Activation from Electroanatomic Mapping.. [More] [Bibtex] [RIS]
  • Zolfaghari, H., Barna, B., Giuseppina Chaira Nestola, ., Obrist, D. & Krause, R (2016). GPU-Accelerated Immersed Boundary Method with CUDA for the Efficient Simulation of Biomedical Fluid-Structure Interaction. In PASC. Lugano. [More] [Bibtex] [RIS]
  • Krause, R., Patrick, Z., Foster, E. & Nestola, M. G (2016). Parallel Variation Transfer between arbitrarly distributed non matching meshes and ita application to contact mechanics and fluid structure interaction. In ECCOMAS Congress 2016. Creete. [More] [Bibtex] [RIS]
  • Becseck, B., Nestola, M. G., Zolfaghari, H., Obrist, D. & Krause, R (2016). FD/FEM Coupling with the Immersed Boundary Method for the Simulation of Aortic Heart Valves. In PASC. Lugano. [More] [Bibtex] [RIS]
  • Favino, M., Bourauel, C. & Krause, R. (2016). A nonlinear poroelastic model for the periodontal ligament. International Journal for Computational Methods in Engineering Science and Mechanics, 17(3), 172-181. [More] [Bibtex] [RIS]
  • Pizzagalli, D. U., Thelen, M., Krause, R. & Gonzalez, S. F (2016). Data mining in time-lapse microscopy for immune cell tracking. In IRB PhD Student Retreat. Engelberg. [More] [Bibtex] [RIS]
  • Nestola, M. G (2016). FE/FD coupling for FSI simulation of heart valves. In National PhD Colloquium on Numerical Modelling of Biomedical Flow Systems. Bern. [More] [Bibtex] [RIS]
  • Pezzuto, S., Kalavsky, P., Potse, M., Prinzen, F. W., Auricchio, A. & Krause, R. (2016). Ricostruzione rapida dell'attivazione cardiaca tridimensionale mediante l'utilizzo di un efficiente solutore eiconale: primi risultati.. [More] [Bibtex] [RIS]
  • Quaglino, A. (2016). A framework for creating low-order shell elements free of membrane locking. International Journal for Numerical Methods in Engineering, 108(1), 55-75. [More] [Bibtex] [RIS]
  • Pizzagalli, D. U., Thelen, M., Krause, R. & Gonzalez, S. F (2016). In-vivo tracking of immune cell interactionsfor a better understanding of immunity. In LS2 Annual Meeting 2016.. Lausanne. [More] [Bibtex] [RIS]
  • Pezzuto, S., Kalavsky, P., Potse, M., Prinzen, F. W., Auricchio, A. & Krause, R. (2016). Inverse modeling for cardiac electrophysiology with fast eikonal approximation.. [More] [Bibtex] [RIS]
  • Lelimousin, M., Limongelli, V. & Sansom, M. S. (2016). Conformational changes in the epidermal growth factor receptor: role of the transmembrane domain investigated by Coarse-Grained metadynamics free energy calculations. J. Am. Chem. Soc., 2016, . [More] [Digital version] [Bibtex] [RIS]
  • Pezzuto, S., Hake, J. & Sundnes, J. S. (2016). Space-discretization error analysis and stabilization schemes for conduction velocity in cardiac electrophysiology. International Journal for Numerical Methods in Biomedical Engineering, 32(10), e02762. [More] [Bibtex] [RIS]
  • Thelen, B (2016). Presentation of PianO software with Industrial Partner. In Deutscher Kongress f\"{u}r Orthopädie und Unfallchirurgie. Berlin. [More] [Bibtex] [RIS]
  • Quaglino, A. & Krause, R. (2016). FoMICS Winter School 2016.. [More] [Bibtex] [RIS]
  • Quaglino, A., Peternier, A., Pasquali, P. & Krause, R (2016). PUPAx - Phase Unwrapping Parallel Accelerator. In Space Technologies Studies Lausanne. [More] [Bibtex] [RIS]
  • Quaglino, A. & Krause, R. (2016). Towards a multigrid method for the minimum-cost flow problem. arXiv preprint arXiv:1612.00201, . [More] [Bibtex] [RIS]
  • Favino, S. P. & Krause, R (2016). Numerical Strategies for Saddle Point Formulation in Cardiology.. In Colloque Numerique Suisse, Fribourg, Campus Prolles. [More] [Bibtex] [RIS]
  • Favino, S. P. & Krause, R (2016). Fully Coupled Solution Strategies for Electro-Mechanics in the Heart.. In Eccomas Congress, Crete. [More] [Bibtex] [RIS]
  • Ludscher, T., Gross, S., Kothari, H., Krause, R. & Reusken, A (2016). A Multigrid Method for Unfitted Finite Element Methods. In International Conference on Multigrid and Multiscale Methods in Computational Sciences. Bruchal Palace - Germany. [More] [Bibtex] [RIS]
  • Zulian, P. (2016). Summer internship at Lawrence Livermore National Lab, Parallel volume transfer between arbitrarily distributed finite element meshes in MFEM, Study of Spectral AMG methods for the solution of least-squares 2nd order PDEs. cooperation,software. [More] [Bibtex] [RIS]
  • Zulian, P. (2016). ParMoonolith: A parallel intersection detection and load balancing library. software. [More] [Bibtex] [RIS]
  • Krause, R. & Zulian, P. (2016). A Parallel Approach to the Variational Transfer of Discrete Fields between Arbitrarily Distributed Unstructured Finite Element Meshes. SIAM Journal on Scientific Computing, 38(3), C307-C333. [More] [Digital version] [Bibtex] [RIS]
  • Li, X., Benedusi, P. & Krause, R. (2016). An Iterative Approach for Time Integration Based on Discontinuous Galerkin Methods. arXiv preprint arXiv:1610.01324, . [More] [Bibtex] [RIS]
  • Maffessanti, F., Kroon, W., Potse, M., Prinzen, F. W., Regoli, F., Murzilli, R. et al (2016). Assessment of left ventricular systolic function: head-to-head comparison between NOGA and MRI. In HRS. San Francisco, CA. [More] [Bibtex] [RIS]
  • Maffessanti, F., Potse, M., Murzilli, R., Conte, G., Caputo, M. L., Regoli, F. et al (2016). Tessuto cicatriziale e potenziali endocardici: confronto tra mappaggio elettroanatomico e risonanza magnetica. In Sesta Giornata della Ricerca Clinica della Svizzera Italiana. Lugano, Switzerland. [More] [Bibtex] [RIS]
  • Pettinati, V., Ambrosi, D., Ciarletta, P. & Pezzuto, S. (2016). Finite element simulations of the active stress in the imaginal disc of the Drosophila Melanogaster. Computer Methods in Biomechanics and Biomedical Engineering, 19(12), 1241-1253. [More] [Bibtex] [RIS]
  • Favino, M (2016). Modeling and Efficient Numerical Simulation of the Loading Conditions of Periodontium. In 2th workshop of the clinical research unit 208 DFG, Bonn. [More] [Bibtex] [RIS]
  • Favino, M (2016). Linear and Non-Linear Domain Decomposition Methods for Coupled Problems. In SIAM PP16, Paris. [More] [Bibtex] [RIS]
  • Favino, M (2016). Impact of Mechanical Deformation on Pseudo-ECGs: a Simulation Study. In Latsis symposium on personalized medicine, Zurich. [More] [Bibtex] [RIS]
  • Favino, M (2016). Efficient Numerical Simulation of the Loading Conditions of Periodontium. In ISAM-TopMath summer school 2011, Munich. [More] [Bibtex] [RIS]
  • Favino, M (2016). Efficient Multigrid Methods for Constrained Saddle-point Problems arising from Multiphysics Applications. In WCCM2016, Seoul. [More] [Bibtex] [RIS]
  • Favino, M (2016). An accuracy condition for discrete poroelasticity system. In Institute of Earth Sciences, University of Lausanne. [More] [Bibtex] [RIS]
  • Favino, M (2016). A Novel Stability Condition for the Finite Element Discretization of Poroelasticity Model. In ECCOMAS, Crete. [More] [Bibtex] [RIS]
  • Favino, M (2016). A new software for modeling seismic velocity dispersion and attenuation in realistically fractured media. In SCCER-SoE annual conference, Sion. [More] [Bibtex] [RIS]
  • Favino, M., Pozzi, S., Pezzuto, S., Prinzen, F. W., Auricchio, A. & Krause, R. (2016). Impact of mechanical deformation on pseudo-ECG: a simulation study. Europace, 305(4), 622-646. [More] [Bibtex] [RIS]
  • Grasedyck, L., Löbbert, C., Wittum, G., Nägel, A., Schulz, V., Siebenborn, M. et al (2016). Space and Time Parallel Multigrid for Optimization and Uncertainty Quantification in PDE Simulations. Software for Exascale Computing-SPPEXA 2013-2015. Springer. [More] [Bibtex] [RIS]
  • Gripari, P., Tamborini, G., Bottari, V., Maffessanti, F., Carminati, M. C., Muratori, M. et al. (2016). Three-Dimensional Transthoracic Echocardiography in the Comprehensive Evaluation of Right and Left Heart Chamber Remodeling following Percutaneous Mitral Valve Repair. Journal of the American Society of Echocardiography, 29(10), 946-954. [More] [Digital version] [Bibtex] [RIS]
  • Benedusi, P., Hupp, D., Arbenz, P. & Krause, R (2016). Time Parallel and Space Time Solution Methods From Heat Equation to Fluid Flow. In. Paris. [More] [Bibtex] [RIS]
  • Benedusi, P., Hupp, D., Arbenz, P. & Krause, R. (2016). A Parallel Multigrid Solver for Time--periodic Incompressible Navier--Stokes Equations in 3D. [More] [Bibtex] [RIS]
  • Favino, M (2016). Variational Multiscale Methods for Reaction-diffusion Problems: an Interesting Case with Multiple Residual Bubble Functions. In Multigrid and Multiscale Methods in Computational Sciences, Bruchsal. [More] [Bibtex] [RIS]
  • Favino, M (2016). Validation of a heterogeneous elastic-biphasic model for the numerical simulation of the PDL. In 3th workshop of the clinical research unit 208 DFG, Bonn. [More] [Bibtex] [RIS]
  • Favino, M (2016). Staggered and monolithic solution strategies for electromechanics in the heart. In 7ECM, Berlin. [More] [Bibtex] [RIS]

2015

  • Land, S., Gurev, V., Arens, S., Augustin, C. M., Baron, L., Blake, R. et al. (2015). Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Science, 471(2184), 20150641. [More] [Bibtex] [RIS]
  • Nestola, M. G., Gizzi, A., Cherubini, C., Filippi, S. & Succi, S. (2015). Novel risk predictor for thrombus deposition in abdominal aortic aneurysms. EPL (Europhysics Letters), 112(2), 28001. [More] [Digital version] [Bibtex] [RIS]
  • Pezzuto, S. (2015). On modeling and simulating the machanics of the heart.. [More] [Bibtex] [RIS]
  • Pizzagalli, D. U., Thelen, M., Krause, R. & Gonzalez, S. F (2015). A tool for a better understanding of immune cell interactions. In Systems Biology of Infection Symposium 2nd Edition.. Ascona. [More] [Bibtex] [RIS]
  • Pizzagalli, D. U., Thelen, M., Krause, R. & Gonzalez, S. F (2015). Data mining in intravital microscopy for immune cell tracking.. In All SystemsX.ch Day 2015.. Bern. [More] [Bibtex] [RIS]
  • Pizzagalli, D. U., Thelen, M., Krause, R. & Gonzalez, S. F (2015). New methods for tracking leukocytes in time-lapse microscopy.. In IRB PhD Student Retreat. Weggis. [More] [Bibtex] [RIS]
  • Pezzuto, S. (2015). Space-discretization error analysis and stabilization schemes for conduction velocity in cardiac electrophysiology.. [More] [Bibtex] [RIS]
  • Pezzuto, S. (2015). Active contraction of the heart and distortion of the microstructural architecture and space-discretization error analysis in computational electrophysiology.. [More] [Bibtex] [RIS]
  • Schneider, T., Zulian, P., Azadmanesh, M. R., Krause, R. & Hauswirth, M. (2015). Vestige: A visualization framework for engineering geometry-related software. [More] [Digital version] [Bibtex] [RIS]
  • Schneider, T., Zulian, P., Krause, R. & Hormann, K (2015). Bijective Finite Element Method. In National Congress on Computational Mechanics. [More] [Bibtex] [RIS]
  • Vincent, K. P., Gonzales, M. J., Gillette, A. K., Villongco, C. T., Pezzuto, S., Omens, J. H. et al. (2015). High-order finite element methods for cardiac monodomain simulations. Frontiers in Physiology, 6(Aug). [More] [Bibtex] [RIS]
  • Maffessanti, F., Addetia, K., Yamat, M., Weinert, L., Lang, R. M. & Mor-Avi, V. (2015). Three-dimensional echocardiography based evaluation of right ventricular remodeling in patients with pressure overload. [More] [Bibtex] [RIS]
  • Maffessanti, F., Kroon, W., Potse, M., Regoli, F., Murzilli, R., Suerder, D. et al (2015). Electromechanical coupling in heart failure patients. In EHRA EUROPACE CARDIOSTIM. Milan, Italy. [More] [Bibtex] [RIS]
  • Maffessanti, F., Suerder, D., Kroon, W., Potse, M., Regoli, F., Murzilli, R. et al (2015). Effects of stem cells therapy on electromechanical coupling. In SIRM Swiss Institute for Regenerative Medicine. Taverne, Switzerland. [More] [Bibtex] [RIS]
  • Maffessanti, F., Suerder, D., Kroon, W., Potse, M., Regoli, F., Murzilli, R. et al (2015). Effect of stem cell therapy on electrical and mechanical activation in heart failure patients. In EHRA EUROPACE CARDIOSTIM. Milan, Italy. [More] [Bibtex] [RIS]
  • Krause, R. & Zulian, P (2015). Massively Parallel Strategies for Contact Problems - Interface Detection, Information Transfer, and Solution National Congress on Computational Mechanics. In National Congress on Computational Mechanics. [More] [Bibtex] [RIS]
  • Favino, M (2015). Parallel methods for cardiac simulation: From light weight adaptivity to coupled models. In 2nd International Workshop on Latest Advances in Cardiac Modeling, Munich. [More] [Bibtex] [RIS]
  • Favino, M (2015). Mathematical modelling and numerical simulation of cardiac mechanics: an implementation in the MOOSE framework. In MALT meeting, Lugano. [More] [Bibtex] [RIS]
  • Favino, M (2015). Investigating the influence of cardiac contraction on ECGs within Lugano-HART, a new framework for coupled electromechanical simulations. In TRM forum, Lugano. [More] [Bibtex] [RIS]
  • Favino, M (2015). Efficient Numerical Simulation of the Periodontal Ligament. In 6th workshop of the clinical research unit 208 DFG, Bonn. [More] [Bibtex] [RIS]
  • Favino, M (2015). A non-linear Poroelastic Model for the Simulation of the PDL including Large Displacements. In Jahrestagung der Deutschen Gesellschaft f\"{u}r Biomechanik, Bonn. [More] [Bibtex] [RIS]
  • Favino, M (2015). A flexible high performance approach to cardiac electromechanics. In ESMC2015, Madrid. [More] [Bibtex] [RIS]
  • Benedusi, P., Hupp, D., Arbenz, P. & Krause, R (2015). A Parallel Multigrid Solver for Time-Periodic Incompressible Navier-Stokes Equations in 3D. In. Oslo. [More] [Bibtex] [RIS]
  • Cavoretto, R., Schneider, T. & Zulian, P (2015). OpenCL based parallel algorithm for RBF-PUM interpolation. In 4th Dolomites Workshop on Constructive Approximation and Applications. [More] [Bibtex] [RIS]
  • Favino, M (2015). The Péclet Number of Poroelasticity and Its Role in the Convergence of Multigrid Solvers. In SIAM GeoScience15, Stanford. [More] [Bibtex] [RIS]

2014

  • Nataf, F., Conen, L., Krause, R. & Dolean, V. (2014). A coarse space for heterogeneous Helmholtz problems based on the Dirichlet-to-Neumann operator. Journal of Computational and Applied Mathematics, 271, 83-99. [More] [Digital version] [Bibtex] [RIS]
  • Pizzagalli, D. U., Thelen, M., Krause, R. & Gonzalez, S. F (2014). Tracking of migrating leukocytes in time-lapse microscopy.. In 2nd International SystemsX.ch Conference.. Lausanne. [More] [Bibtex] [RIS]
  • Pizzagalli, D. U., Thelen, M., Krause, R. & Gonzalez, S. F (2014). Leukocyte tracking. In SIB/SystemsX.ch joint summer school on systems medicine and its applications.. Kandersteg. [More] [Bibtex] [RIS]
  • Time Series), ., editor. (2014). Statistical regression analysis of exceedances over a high threshold based on incomplete observation data. [More] [Bibtex] [RIS]
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